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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttcacattcttgactcattcttcttagtaatcaatcatcttgttgtatctaacgaaaggcaggaaatatgtcaagtttgaatttaacacacttatgtttcaatgttgcag

Basic information

species Glycine max
transcript GLYMA14G37520.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G37520.3 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g18310.1 (Oryza sativa), 5'ss of exon 6
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttcacattcttgactcattcttcttagtaatcaatcat-cttgttgtatctaacgaaaggcaggaaatatgtcaagtttgaatttaacacacttatgtttcaatgttgcag
||  | ||||||||||| || ||||| |  || || ||||| || ||||| || |||||||||||||||||| | || ||||||||||||||||| |||||     | |   |   ||  |||||  || | ||   ||||  |  | ||||    |   |  || |   | | | | |||| ||||  |                        
GTTGGGTTGCCAGCTCGTGGTAAGACCTTTACAGCGGCTAAGCTTACAAGGTACCTTCGATGGTTAGGTCATGAAACAAAACACTTCAATGTTGGAAAGgtgcgcaatagcttaagctgtttctttata-tgattgctcatattcatggtattagccactaatcatgt--tttcttacgtttcaattgtag-----------------------

upper sequence: GLYMA14G37520.3 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g07130.1 (Oryza sativa), 5'ss of exon 7
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttcacattcttgactcattcttcttagtaatcaatcatcttgttgtatctaacgaaaggcaggaaatatgtcaagtttgaatttaacacacttatgtttcaatgttgcag-----
||  |  | |||||||| || || ||||  || |||||||| || ||||| || ||||| |||||||||||| | |||| ||| ||||||||||| |||||  || | ||||||            ||  | || |||  | |||    |  |  || | |   |    | || |||||  |||  |||| | ||| || || ||  | |  |     
GTTGGCCTACCAGCTCGTGGTAAAACTTTTACCGCAGCTAAGCTTACAAGGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgtgatt-atattctt------------ttcctgattaattgttttgccacaa-tggcgtatgttggattgtttggcaagt--gaacataactctcttttggttgaaactcggtgtgcag

upper sequence: GLYMA14G37520.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM5G824405_T01 (Zea mays), 5'ss of exon 7
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttcacattcttgactcattcttcttagtaatcaatcatcttgttgtatc-taacgaaaggcaggaaatatgtcaagtttgaatttaacacacttatgtttcaatgttgcag
||  |  | ||||||||||| ||||| |  || ||||||||||| ||||||||||| ||||||||||||||| | || ||||||||||||||||| |||||  |       ||| |   | | || |    ||  |||    |   |||||  || ||  |  || |     | |   ||||   | ||                         
GTTGGGCTACCAGCTCGAGGTAAGACCTTTACAGCAGCTAAACTTACAAGATATCTCCGATGGTTAGGTCATGAAACAAAACACTTCAATGTTGGAAAGgtgataatttagcttaagctaattttgtagagaa--aattgcatgtgtgtatggtatcgctaatcatgtttgctattttgttt---tctag------------------------

upper sequence: GLYMA14G37520.3 (Glycine max), 5'ss of exon 7
lower sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 7
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttcacattcttgactcattcttcttagtaatcaatcatcttgttgtatc-taacgaaaggcaggaaatatgtcaagtttgaatttaacacacttatgtttcaatgttgcag
||  | ||||| |||||||| |||||||  |||||||| ||  | ||||||||||| || ||||| || ||| |||| ||||| || |||||||| ||||||    |  || |||    ||  |||||  |  |   | | ||| |  | || | |||  |  |  |     ||  ||| |||| |  ||||    |  |||||  ||  |   
GTTGGCTTGCCTGCTCGAGGAAAGACTTTTACTGCAGCAAAGTTGACAAGATATCTACGCTGGTTGGGACATGATACTAAACATTTTAATGTTGGAAAGgttagctattttgttg--caatgattcttgatttttt-ttagcttatcctgtcattacgcgacccttgt----tggaaagattgactcaaacattgctccgtttctttgcag---

upper sequence: GLYMA14G37520.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttcacattcttgac-tcattcttcttagtaatcaatcatcttgttgtatctaacgaaaggcaggaaatatgtcaagtttgaatttaacacacttatgtttcaatgttgcag
||  | |||||||||||||| || ||||  |||||||||||||| |||||||||||||| ||||| |||||| | |||||||||||||||||||| |||||  || | ||| || |  | |||| ||  ||     ||||||           | | |  ||| | ||   || | |  ||||  | |||||                      
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatttatatttttaaagttattcatcacagct-ctaatcat-----------tgaagtgagg-aagattgatatgacttttggttgtaacag---------------------

upper sequence: GLYMA14G37520.3 (Glycine max), 5'ss of exon 7
lower sequence: PP1S242_66V6.1 (Physcomitrella patens), 5'ss of exon 8
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgt------------------------------tgttcacattcttgactcattcttc---ttagtaat-caatc---atcttgttgtatctaacgaaaggcaggaaatatgtcaagtttgaatttaacacacttatgtttcaatgttgcag---------------------------
||  | ||||| || || || ||||||| |||||||||||| || ||  ||||| | |||||| |||||||| ||||||| ||||| ||||| || |||||                              ||||||||||||   |   ||  |    || |||    |||     |||   | | |     |    | |   ||  | |    |   | ||||| |  |||    | || |  |                               
GTTGGGTTGCCGGCGCGTGGAAAGACTTTCACTGCAGCTAAGCTGACCCGATATTTGCGATGGCTAGGTCATGATACCAAGCACTTTAATGTCGGCAAGgtacgattcgagagatctgggtatttagctggtgttcacattctcagcgtgtttcttcttttggtagcataatttaggtctgactatgttgcgtgtccagtatccaagttcttccttcaaattttaaaattcttgcactacagtactttgacatcgcttgcacttttgacgtttacag

upper sequence: GLYMA14G37520.3 (Glycine max), 5'ss of exon 7
lower sequence: PP1S235_92V6.1 (Physcomitrella patens), 5'ss of exon 6
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttcacattcttgactcattcttcttagtaatcaatcatcttgttgtatctaacgaaaggcaggaaatatgtcaagtttgaatttaacacacttatgtttcaatgttgcag-
||  |  | || |||||||| |||||||  || |||||||| || || ||||||||  | ||| | || ||| |||||||||||||||||||||| |||||       |  |||       ||   ||||||  || | |    || |||| |   ||     |   | | ||    |        |     ||||  |||    ||||  || 
GTTGGCCTACCTGCTCGAGGGAAGACTTTTACAGCAGCTAAGCTGACGAGATATCTCAGGTGGCTTGGCCATGATACCAAACACTTCAATGTTGGAAAGgt-------aagcttagtctgctca--ttagtagacagtgaaa--gtagtattt--tgagctttaactattgtgagggggacagtcattgtctacttg-gttctggtgtt-tagt

upper sequence: GLYMA14G37520.3 (Glycine max), 5'ss of exon 7
lower sequence: PP1S215_89V6.1 (Physcomitrella patens), 5'ss of exon 8
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgt-tgttc-----acattcttgac----------tcattcttcttag-taatcaatcatcttg-ttgtatc-taacgaaaggcaggaaatatgtcaagtttgaatttaacacacttat----gtttcaatgttgcag--------------------------------------------------------
||  | || || ||||| || ||||| | ||||||||||||||| || |||||| | || |||||||||||| | ||||| |||||||||||||| ||||| ||||      | | | |  ||          ||| |||||| |  | ||   |  | ||| ||| ||  |   |  | |     | | |||  |      || |||    ||  |    |||| |   ||  ||                                                        
GTTGGGTTACCGGCTCGTGGAAAGACATTCACTGCAGCTAAACTGACCAGATATTTGCGGTGGTTAGGTCATGACACCAAGCACTTCAATGTTGGCAAGgtatgtttttagaaaactttgtacgcagctggtgtcaatcttctcaacttatttcttgttttggttgcatgattttgggatgattatattttgtgtacccaatatctaaggtgctctttcaggttttagccttagagtgcacactttttgcagtggagtattttgatgcgattgtgcttttgatgtttcacag

upper sequence: GLYMA14G37520.3 (Glycine max), 5'ss of exon 7
lower sequence: EFJ07288 (Selaginella moellendorffii), 5'ss of exon 3
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttcacattcttgactcattcttcttagtaatcaatcatcttgttgtatctaacgaaaggcaggaaatatgtcaagtttgaatttaacacacttatgtttcaatgttgcag
||| | || |||||  | || || |||| |||||| |  || ||||||||||||||||| ||| | |||||| | || ||||||||||| ||||| || ||   |||    |||   |  |  |     |   |||    | | ||   || |  |  |   |||                                                
GTGGGCTTACCAGCAAGGGGGAAAACTTTCACTGCTGTCAAGCTAACAAGATATCTTCGTTGGCTTGGTCATGACACTAAACACTTCAACGTTGGAAAAgtcagtcagtcactttgtttgtcttgaagggctctcaggtttttggtgtgatttttcttac--cag------------------------------------------------