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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGATTGGCCCTCAAAGAGGATGCCGTTCAACTTGGTCCTGCATTACTCTTCTTTGGATGTAGGAATCGACAAATGgtaaaataattgcttggtgggcttttttaatcctgatggagttttagaatgatccgggattttcctgtgtatag

Basic information

species Glycine max
transcript GLYMA14G36070.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G36070.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 15
GAAAGATTGGCCCTCAAAGAGGATGCCGTTCAACTTGGTCCTGCATTACTCTTCTTTGGATGTAGGAATCGACAAATGgtaaaataattgcttggtgggcttttttaatc--ctgatggagttttagaatgatccgggat----tttcctgtgtatag------------
|||||||||||||||||||||||||  |||||||||||||||||  |||| |||||||||||| ||||||| |  |||||||    | ||||      | |     ||        | || || |   ||   | || ||    ||||||     |              
GAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATGgtaaggataatgctacagaagttcagacaaataatcttttgaattctttgatcccctggaataagatttcctaatcttgatctctgttatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208322525|gb|GE122622.1|GE122622
EST:     TTCAACTTGGTCCTGCATTACTCTTCTTTGGATGTAGGAATCGACAAATG                         GATTTTATTTATGAGGATGAGCTAAAGAATTTTATGGAACAAGGTGCTCTG
genomic: TTCAACTTGGTCCTGCATTACTCTTCTTTGGATGTAGGAATCGACAAATGgtaaaataat ... ctgtgtatagGATTTTATTTATGAGGATGAGCTAAAGAATTTTATGGAACAAGGTGCTCTG
EST: gi|192300217|gb|FG989339.1|FG989339
EST:     TTCAACTTGGTCCTGCATTACTCTTCTTTGGATGTAGGAATCGACAAATG                         GATTTTATTTATGAGGATGAGCTAAAGAATTTTATGGAACAAGGTGCTCTG
genomic: TTCAACTTGGTCCTGCATTACTCTTCTTTGGATGTAGGAATCGACAAATGgtaaaataat ... ctgtgtatagGATTTTATTTATGAGGATGAGCTAAAGAATTTTATGGAACAAGGTGCTCTG