Sequence
atgc intronic sequence ATGC exonic sequenceTTTTCACCCTAATAAAGATGATCTTATCTGCTCTTGTGATGTTGATGGTGAGATAAGATATTGGAGCATTAACAATGGCAGTTGTGCTAGAGTCTCAAAGgtagaattttagcatatgcataatgcatttgtttacttggttgtgtattgagtttacatttcagtttgctaaactgaaaatttttcttactgattag
Basic information
species | Glycine max |
transcript | GLYMA14G16040.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G16040.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv04s0008g04890.t01 (Vitis vinifera), 5'ss of exon 16
TTTTCACCCTAATAAAGATGATCTTATCTGCTCTTGTGATGTTGATGGTGAGATAAGATATTGGAGCATTAACAATGGCAGTTGTGCTAGAGTCTCAAAGgtagaattttag-catat-gcataatgcatttgtttacttggttgtgtattgagtttacattt-cagtttgctaaactgaaaatttttcttact--gattag
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CTTCCACCCGAATCAAGATGATCTCATCTGCTCTTGTGATGGAGATGGTGAGATACGATACTGGAATATTAAGAACGGTAGCTGTGCAAGGGTATTCAAGgtagaaactagttcatgttggtttatgcatttcataaattatgtaagccttggaggggtatggacattcttggagaattctaattttcttcatttcaattag
upper sequence: GLYMA14G16040.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv04s0008g04910.t01 (Vitis vinifera), 5'ss of exon 6
TTTTCACCCTAATAAAGATGATCTTATCTGCTCTTGTGATGTTGATGGTGAGATAAGATATTGGAGCATTAACAATGGCAGTTGTGCTAGAGTCTCAAAGgtagaattttag-catat-gcataatgcatttgtttacttggttgtgtattgagtttacattt-cagtttgctaaactgaaaatttttcttact--gattag
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CTTCCACCCGAATACAGATGATCTCATCTGCTCTTGTGATGGAGATGGTGAGATACGATACTGGGTTATTAAGAACGCTTGCTGTGCAAGGGTATTCAAGgtagaaactagttcatgttggtttatgcatttcataaattatgtaagccttggaggggtatggacattcttggagaattctaattttcttcatttcaattagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192318709|gb|FK011407.1|FK011407EST: AGATAAGATATTGGAGCATTAACAATGGCAGTTGTGCTAGAGTCTCAAAG GGTGGCACAGCTCAAATGAGATTTCAACCTCGTCTAGGGAGGTACCTAGCT
genomic: AGATAAGATATTGGAGCATTAACAATGGCAGTTGTGCTAGAGTCTCAAAGgtagaatttt ... tactgattagGGTGGCACAGCTCAAATGAGATTTCAACCTCGTCTAGGGAGGTACCTAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTTCACCCTAATAAAGATGATCTTATCTGCTCTTGTGATGTTGATGGTGAGATAAGATATTGGAGCATTAACAATGGCAGTTGTGCTAGAGTCTCAAAGgtagaattttagcatatgcataatgcatttgtttacttggttgtgtattgagtttacatttcagtttgctaaactgaaaatttttcttactgattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA