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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCTGTTTTTCACAATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAGgtataatattggttgcattttattatcaatctattgcattaaggttgttgatttattatgtaattcccttctggttgaatag

Basic information

species Glycine max
transcript GLYMA14G07120.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07120.1 (Glycine max), 5'ss of exon 15
lower sequence: AT3G55610.1 (Arabidopsis thaliana), 5'ss of exon 18
TGCTGCTGTTTTTCACAATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAGgtataa------------tattggttgcattttat-tatcaatctattgcattaag----gttgttgatttatt-----atgtaattcccttctggttgaatag
|||||||||||| |||||||||||||| |||||   ||||||     | || ||||| || || ||||||               ||    |   ||   || ||| || | |    ||  ||    ||   ||| | | |     |||| |||   |  |   || ||||
TGCTGCTGTTTTCCACAATGCAAGCACAAGATTCTCTGATGGTTTTAGGTTCGGACTTGGTGCTGAGgtagggaagagagagagttaccaataatatcacatatataaaccaaacaaatggagaagtgtcaatgaataaatggccaatgtgatttgttctta--tgtatag

upper sequence: GLYMA14G07120.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv13s0019g02360.t01 (Vitis vinifera), 5'ss of exon 18
TGCTGCTGTTTTTCACAATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAGgtataatattggttgcat-tttatt----atcaatctattgcattaaggttgttgatt----tattatgtaattcccttctggttgaatag
||||||||| ||||||||||| ||||| |||||| |||||||||| || |||||||| || || |||||||  |     |  ||  ||||||    || |||| ||    || ||||  ||        |  | |  | ||  |||   | |||||||
TGCTGCTGTCTTTCACAATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttcaattaccacgtttattggacattaatccatgtggttgaggtccttacccctgatggttttcatttttcttaatgctgaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014861|gb|CX701603.1|CX701603
EST:     ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAG                         GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAG
genomic: ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAG
EST: gi|6072812|gb|AW102199.1|AW102199
EST:     ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAG                         GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAG
genomic: ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAG
EST: gi|16345479|gb|BI971074.1|BI971074
EST:     ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAG                         GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAG
genomic: ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAG
EST: gi|208153176|gb|GD949189.1|GD949189
EST:     ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAG                         GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAG
genomic: ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAG
EST: gi|16342203|gb|BI967798.1|BI967798
EST:     ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAG                         GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAG
genomic: ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAG
EST: gi|19269540|gb|BM885796.1|BM885796
EST:     ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAG                         GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAG
genomic: ATGCAAGCACCAGATTTAGTGATGGGGCACGATTTGGACTGGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGTGTTGAG