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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAGgttgattatatgttgtgattaagcaattttgatgaatattaatatgatatttttgtttcataatcattgatttagtactgaatggttcttgaaattattgttattttccatttggttacttcctgctcag

Basic information

species Glycine max
transcript GLYMA14G06340.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 15
GGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAGgttgattatatgttgtgattaagcaattttgatgaatatta---atatgatatttttgtttcataatcattga-tttagtactgaatggttcttgaaattattgttattttccatttggttacttcctgctcag
|| ||||| || |||||  | |||||||| ||||||||||| ||  | |||||||||||||| || |||||||||||||| ||||||||  ||  | |        |||   ||||  ||| ||| |    || | |||  |||| ||  | | |||  | || |||  ||  | |   |    |  ||    |||||  |   |                
GGAGCTGTCAACTTTGCGCTCATGATGTCACAAATGGAGGGGGGCTGTCCAGTTGATTACAATACTATAACTGATCTCTTCCTTCAGgt--atccttt--------taattcatttcaatgcatagtcggtatgtaatacctttgcttttttaccatgaaattcagttgtgtcttgcctt----accatgcccattttttaacag----------------

upper sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 13
GGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAGgttgattatatgttgtgattaagcaa-ttttgatgaatatta--atatgatattttt----gtttcataatcattgatttagtactgaatggttcttgaaat-ta--ttgttattttccatttggttac-ttcctgctcag
|| ||||| || |||||||| |||||||| ||||||||||||||| | ||||| || |||||||| || ||||||||||| ||||||||   || | | || | |  |   || || |  |   || ||  |||| | ||| ||    || |   ||   |  ||  ||| ||   | ||  |    || ||  ||| | |||| | || | |||| ||| |   |||
GGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAGgtatcttttgtattattagcatataaattcttttctgtagtagtatataaaattctttgttgtctgggaactctccatgcagttcttt-tagtcttcactatgtaatttggttttttgctttggcttacattcttcaacag

upper sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 15
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 15
GGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAGgttgatta-tatgttgtg-attaagcaattttgatgaatattaatatgatatttttgtttcataatcattgatttagtactgaatggttcttgaaattattgt-tattttccatttggttacttcctgctcag
|| || || ||||||||||||||||||||||||||||| ||||||   |||||||| |||||||| || |||||||| ||||||||||| | | | ||| || || ||  | |||| ||  |   |      || |  | ||    || ||   |  || || |||   | | | | |  |||||||  | |  ||     |   ||  | | |  ||||
GGAGCAGTAAATTTTGCATTAATGATGTCTCAAATGGAAGGAGGTTCTCCAGTTGACTACAACACCATCACTGATCTTTTTCTTCAGgtaggtcaatatattctgtatgcaccaatatttgtagct-----cattacttgttctactcctatatacagaatt-gtatacagtagatgt--aaattatcatgtgcttatttgtctatttgtgcatattcag

upper sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 15
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 15
GGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAGgttgattatatgttgtgattaagcaattttgatgaatattaatatgatatttttgtttcataatc-attgatttagtactgaatggttcttgaaattattgttattttccatttggttacttcctgctcag
|| || || |||||||| ||||||||||| |||||||| |||||| | |||||||| |||||||| || |||||||| || |||||||| ||  |  |     || ||  |  | |  || ||  |  || | || |  |||||||| ||   |   ||   || || |   || |||   | | |||  || |||                      
GGAGCAGTAAATTTTGCTTTAATGATGTCCCAAATGGAAGGAGGTTGTCCAGTTGACTACAACACTATCACTGATCTTTTCCTTCAGgt-gaacacgta----gaatatactgtgtacataaaattgtatctcat-tacttgtttcacaagagagctatcatgtgctaat--gtactt---acttttgc-atattcag--------------------

upper sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 15
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 15
GGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAGgttgattatatgttgtgattaagcaattttgatgaatattaatatgatatttttgtttcataatcattgatttagtactgaatggttcttgaaattattgttattttccatttggttacttcctgctcag
|| ||||| ||||||||  |||||||||||||||||||||||||| | ||  ||||||  || || ||||||||||||||||||||||||  |||     ||||| |  ||    |       |||||||   |||| |   | ||||||||| |||| |   | |   ||||     |   | ||||   ||||||    |               
GGAGCTGTAAATTTTGCGCTAATGATGTCTCAAATGGAGGGAGGTTGTCCCATTGATTTTAATACGATAACTGATCTCTTTCTTCAGgtttgtta-----tgtgact--gctgcctc------tattaattgaatatata-atatcataatcactgatcttacattttttggtaaccaa---tcttgtatctttccacaccgca-------------