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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCATGCCAGTGATTGAATCAGGTTCTGGAAAGCAAACAAGTAAAGCTAGTAGTGCTAGTTTCAGTTCTAAGCGGTCGACATTCTGGGGAAGGAGCAATgtgagttacaggaatcacaattacattaacaaccatttataggacaatgatacatttatgtgacactgaatatgctagcagtggatatacttaaattatgctatgtgaggcaaaactgatattttcttcccagtttttgtagttttgaattttcaaggtaaatacatggcatctgataatttgttctgatttaagcag

Basic information

species Glycine max
transcript GLYMA14G03960.2
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193510804|gb|FK466714.1|FK466714
EST:     GTAGTGCTAGTTTCAGTTCTAAGCGGTCGACATTCTGGGGAAGGAGCAAT                         CCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCTGGAGAAGAGGA
genomic: GTAGTGCTAGTTTCAGTTCTAAGCGGTCGACATTCTGGGGAAGGAGCAATgtgagttaca ... atttaagcagCCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCTGGAGAAGAGGA
EST: gi|193529085|gb|FK486071.1|FK486071
EST:     GTAGTGCTAGTTTCAGTTCTAAGCGGTCGACATTCTGGGGAAGGAGCAAT                         CCAAGGAAGACACCG
genomic: GTAGTGCTAGTTTCAGTTCTAAGCGGTCGACATTCTGGGGAAGGAGCAATgtgagttaca ... atttaagcagCCAAGGAAGACACCG
EST: gi|193500503|gb|FK464048.1|FK464048
EST:     GTAGTGCTAGTTTCAGTTCTAAGCGGTCGACATTCTGGGGAAGGAGCAAT                         CCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCTGGAGAAGAGGA
genomic: GTAGTGCTAGTTTCAGTTCTAAGCGGTCGACATTCTGGGGAAGGAGCAATgtgagttaca ... atttaagcagCCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCTGGAGAAGAGGA
EST: gi|9820861|gb|BE556371.1|BE556371
EST:     GTAGTGCTAGTTTCAGTTCTAAGCGGTCGACATTCTGGGGAAGGAGCAAT                         CCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCTGGAGAAGAGGA
genomic: GTAGTGCTAGTTTCAGTTCTAAGCGGTCGACATTCTGGGGAAGGAGCAATgtgagttaca ... atttaagcagCCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCTGGAGAAGAGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCCATGCCAGTGATTGAATCAGGTTCTGGAAAGCAAACAAGTAAAGCTAGTAGTGCTAGTTTCAGTTCTAAGCGGTCGACATTCTGGGGAAGGAGCAATgtgagttacaggaatcacaattacattaacaaccatttataggacaatgatacatttatgtgacactgaatatgctagcagtggatatacttaaattatgctatgtgaggcaaaactgatattttcttcccagtttttgtagttttgaattttcaaggtaaatacatggcatctgataatttgttctgatttaagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA