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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCAGAGGCTAAAGCTGCAACTGCAGAGGAGAGAGAGCGATCTGTGAATGAACGCTTATCTCAGACCTTATCTCGAATTAATGTCCTTGAGGCTCAGgttctgtaatttctcaagtgaaatcatgtctttaatggcaattttttgtataaatgacttactttgttctttaacaatgaattacag

Basic information

species Glycine max
transcript GLYMA13G43330.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G43330.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv16s0098g00540.t01 (Vitis vinifera), 5'ss of exon 12
GAAGCAGAGGCTAAAGCTGCAACTGCAGAGGAGAGAGAGCGATCTGTGAATGAACGCTTATCTCAGACCTTATCTCGAATTAATGTCCTTGAGGCTCAGgttctgtaatttctcaagtgaaat-catgtctttaatggcaattttttgtataaatgacttactttgttctttaacaatgaattacag
|| || |||||||||||||||||||| ||||| | |||| ||||||| ||||||||||| || || ||||||||| || | ||||||||||| || |||||  |   | |||    ||| | | ||  |  |   |    |||| || ||| ||| | | |||     |  ||  || ||    |||
GAGGCGGAGGCTAAAGCTGCAACTGCTGAGGAAAAAGAGAGATCTGTAAATGAACGCTTGTCGCAAACCTTATCTAGAGTAAATGTCCTTGAAGCACAGgtgattccaattcctctgtggattacagatgctagttatggatttgttatatgaat-attgact---cacactagtaa-gatgcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10845484|gb|BF068603.1|BF068603
EST:     ATGAACGCTTATCTCAGACCTTATCTCGAATTAATGTCCTTGAGGCTCAG                         ATTTCATGTCTTAGAGCTGAACAGACTCAGTTAAGTAGGACCCTTGAAAAG
genomic: ATGAACGCTTATCTCAGACCTTATCTCGAATTAATGTCCTTGAGGCTCAGgttctgtaat ... tgaattacagATTTCATGTCTTAGAGCAGAACAGACTCAGTTAAGTAGGACCCTTGAAAAG