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TGACCAACAAGTACAAGGTATTCTAAATCTCATTGATCTTGCTGGGAGTGAACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAAgtatgcagagccgtgatgttttctatttcatttacttaagcttctttgatttctattaatctaaactttctttcatttgtaattag
species | Glycine max |
transcript | GLYMA13G36230.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAA GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCCEST: gi|193419543|gb|FK383193.1|FK383193
genomic: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAAgtatgcagag ... ttgtaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCC
EST: ACCGGGGACCGATTGAAAGAGACTCAA GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCCEST: gi|208072762|gb|GD872363.1|GD872363
genomic: ACCGGGGACCGATTGAAAGAGACTCAAgtatgcagag ... ttgtaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCC
EST: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAA GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCCEST: gi|10255088|gb|BE822854.1|BE822854
genomic: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAAgtatgcagag ... ttgtaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCC
EST: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAA GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCCEST: gi|16996302|gb|BM085674.1|BM085674
genomic: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAAgtatgcagag ... ttgtaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCC
EST: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAA GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCCEST: gi|193542299|gb|FK497517.1|FK497517
genomic: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAAgtatgcagag ... ttgtaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCC
EST: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGGGACTCAA GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCCEST: gi|5820092|gb|AI988298.1|AI988298
genomic: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAAgtatgcagag ... ttgtaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCC
EST: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAA GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCCEST: gi|207785336|gb|GD759087.1|GD759087
genomic: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAAgtatgcagag ... ttgtaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCC
EST: AACGTC-TTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAA GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCCEST: gi|208305868|gb|GE109547.1|GE109547
genomic: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAAgtatgcagag ... ttgtaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCC
EST: GGGACCGA-TGAAAGAGACTCAA GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCCEST: gi|208218829|gb|GE016147.1|GE016147
genomic: GGGACCGATTGAAAGAGACTCAAgtatgcagag ... ttgtaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCC
EST: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAA GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCCEST: gi|51344240|gb|CO984973.1|CO984973
genomic: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAAgtatgcagag ... ttgtaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCC
EST: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAA GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCCEST: gi|208186092|gb|GD985433.1|GD985433
genomic: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAAgtatgcagag ... ttgtaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCC
EST: ATCAACCGGGGACCGATTGAAAGAGACTCAA GCAATAAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCEST: gi|14205310|gb|BG838988.1|BG838988
genomic: ATCAACCGGGGACCGATTGAAAGAGACTCAAgtatgcagag ... ttgtaattagGCAAT-AAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGC
EST: ACGTTTTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAA GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCCEST: gi|11687964|gb|BF595640.1|BF595640
genomic: ACG-TCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAAgtatgcagag ... ttgtaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCC
EST: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAA GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCCEST: gi|207687107|gb|GD669795.1|GD669795
genomic: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAAgtatgcagag ... ttgtaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCC
EST: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAA GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCCEST: gi|208323722|gb|GE122293.1|GE122293
genomic: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAAgtatgcagag ... ttgtaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCC
EST: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAA GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCCEST: gi|193306454|gb|FK273379.1|FK273379
genomic: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAAgtatgcagag ... ttgtaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCC
EST: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAA GCAATAAATAAAAGTCTGTCATCATTAAGEST: gi|208326181|gb|GE121095.1|GE121095
genomic: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAAgtatgcagag ... ttgtaattagGCAATAAATAAAAGTCTGTCATCATTAAG
EST: CCGGGGACCGATTGTAAAGAGTACTTCAA GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTGATATTTGCCTTGGCEST: gi|193696453|gb|FK636629.1|FK636629
genomic: CCGGGGACCGATTG-AAAGAG-AC-TCAAgtatgcagag ... ttgtaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGC
EST: CCGGGGACCGATTGAAAGAGACTCAA GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCCEST: gi|193571531|gb|FK532762.1|FK532762
genomic: CCGGGGACCGATTGAAAGAGACTCAAgtatgcagag ... ttgtaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCC
EST: GACCGATTGAAAGAGACTCAA GCAATAAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCEST: gi|51334869|gb|CO978735.1|CO978735
genomic: GACCGATTGAAAGAGACTCAAgtatgcagag ... ttgtaattagGCAAT-AAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGC
EST: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAA GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCC
genomic: AACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAAgtatgcagag ... ttgtaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTAATATTTGCCTTGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACCAACAAGTACAAGGTATTCTAAATCTCATTGATCTTGCTGGGAGTGAACGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAGACTCAAgtatgcagagccgtgatgttttctatttcatttacttaagcttctttgatttctattaatctaaactttctttcatttgtaattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA