Sequence
atgc intronic sequence ATGC exonic sequenceGCTTGGAGGGGATCTGACACCTGCAAGAGCATTTACATCACTTTCTCTGTTTTCCGTGCTTCGATTTCCTCTCTTCATGCTTCCTAATACTATAACTCAGgtcaggttattctcctttgcaattttcttttgtttctttgattttgcagcaggatgccttctcctatgtttttgtactctctctatttgtattccctttc...
Basic information
species | Glycine max |
transcript | GLYMA13G29180.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G29180.1 (Glycine max), 5'ss of exon 15
lower sequence: AT2G34660.1 (Arabidopsis thaliana), 5'ss of exon 15
GCTTGGAGGGGATCTGACACCTGCAAGAGCATTTACATCACTTTCTCTGTTTTCCGTGCTTCGATTTCCTCTCTTCATGCTTCCTAATACTATAACTCAGgtcaggtt----attctcctttgcaattttcttttgtttctttgattttgcagcaggatgccttctcctatgtttttgtactctctctat---ttgtattccctttc--------------------------------------------------------------------
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ACTTGGAGGAGACCTGACCCCTGCAAGAGCATTTACGTCACTCTCTCTCTTTGCTGTGCTTCGTTTCCCTCTCTTCATGCTTCCAAACATTATAACTCAGgtgatttcttaaatatgttgttgcaatgcatgtgtattaagtagaactgttagt-gcttgtagtaactgtcgtttggttatcaaatccatgacttatatttcgaatttacatgctggagggtatccttgctggtgccagaaacagatgccgatgctgactagttttcacttgtag
upper sequence: GLYMA13G29180.1 (Glycine max), 5'ss of exon 15
lower sequence: AT1G30400.2 (Arabidopsis thaliana), 5'ss of exon 15
GCTTGGAGGGGATCTGACACCTGCAAGAGCATTTACATCACTTTCTCTGTTTTCCGTGCTTCGATTTCCTCTCTTCATGCTTCCTAATACTATAACTCAGgtcaggttatt-------ctcctttgcaattttcttttgtttctt------tgattttgcagcag----gatgccttctccta--tgtttttgtactctctctatttgtattccctttc----------------------------------------------------------
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GCTTGGAGGAGATCTGACACCTGCAAGAGCGTTTACGTCACTCTCTCTATTTTCTGTGCTTCGCTTCCCTTTATTCATGCTTCCAAACATTATAACTCAGgtgatttccttaaaatgtttcttgaaccatgttttcatgtccagtactgaataatgtggcatcagtagtaatgattgcttctgattgctcttttaat-tttccatctctacctctttttctagaccagtcgttgtcataatgtttttgcagatgctgaccaggctttacttttgtag
upper sequence: GLYMA13G29180.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 15
GCTTGGAGGGGATCTGACACCTGCAAGAGCATTTACATCACTTTCTCTGTTTTCCGTGCTTCGATTTCCTCTCTTCATGCTTCCTAATACTATAACTCAGgtcaggttattctcctttgcaattttcttt-tgtttctttgattttgcagcaggatgccttctcctatgtttttgtactctctctatttgtattccctttc
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GCTTGGAGGGGATCTCACACCTGCAAGGGCATTTACATCACTTTCTCTGTTTGCAGTCCTACGGTTTCCCCTGTTTATGCTTCCTAATATAATAACCCAGgttctgtctttttccacctttgttgcattcatgttttttcccatctatatatgtgtgtgtgtctgtagatatatatattatgtcaatt-atgtttatcaaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208180711|gb|GD979694.1|GD979694EST: TTTCCGTGCTTCGATTTCCTCTCTTCATGCTTCCTAATACTATAACTCAG GTGGTTAATGCAAATGTATCGTTGAAGAGACTAGAAGATTTACTCTTAGCA
genomic: TTTCCGTGCTTCGATTTCCTCTCTTCATGCTTCCTAATACTATAACTCAGgtcaggttat ... ggtcttaaagGTGGTTAATGCAAATGTATCGTTGAAGAGACTAGAAGATTTACTCTTAGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTTGGAGGGGATCTGACACCTGCAAGAGCATTTACATCACTTTCTCTGTTTTCCGTGCTTCGATTTCCTCTCTTCATGCTTCCTAATACTATAACTCAGgtcaggttattctcctttgcaattttcttttgtttctttgattttgcagcaggatgccttctcctatgtttttgtactctctctatttgtattccctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc