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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTGAATTATATGATTTTGATGATGAGAAGgtaaagatgacacatgacacattgttttatctttggcaactttttgtattgctttgtatcaacctactctcccctttccctgtcttatctatttaactgacattggcatattaattaacctttttaaataaag

Basic information

species Glycine max
transcript GLYMA13G28720.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 15
lower sequence: AC235535.1_FGT001 (Zea mays), 5'ss of exon 15
CTGCTGAATTATATGATTTTGATGATGAGAAGgtaaagat---gacacatgacacat-tgttttatctttggcaactttttgtattgctttgtatcaacctactctcccctttccctgtcttatctatttaactgacattggcatattaattaacctttttaaataaag
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ATGCCGAACTGTATGATTTTGATGATGAGAAGgtaatgattcaaacattcaattcatgtgctgtaaattgtgagtgtttttttgacgtgtcttgctcaacaccaattaaattctcctccatgattgcttgaag------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254331883|gb|GR846193.1|GR846193
EST:     CTGCTGAATTATATGATTTTGATGATGAGAAG                         GATGAAAACAGATTTGATATNNNNNNNNTTGTGAGCGAGAACTGGATTGAA
genomic: CTGCTGAATTATATGATTTTGATGATGAGAAGgtaaagatga ... ttaaataaagGATGAAAACAGATTTGATATAAAAAAAATTGTGAGCGAGAACTGGATTGAA