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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGAAATAGATGGCAAGATCTTTGGTAAAGGCATTGGATTAACATGGGATGAGGCTAAAATGCAGgtctgttgttttctttaattatgaaatattattatgaatatatgtcttactccattaacttgattaacttcttcacatatggcgttggagcactaaatatgcattctttctttag

Basic information

species Glycine max
transcript GLYMA13G25010.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G25010.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv00s0370g00030.t01 (Vitis vinifera), 5'ss of exon 3
GTCGAAATAGATGGCAAGATCTTTGGTAAAGGCATTGGATTAACATGGGATGAGGCTAAAATGCAGgt-----ctgttgttttctttaattatgaaatattattatgaatatatgtcttactccattaacttgattaacttcttcacatatggcgttggagcactaaa--tatgcattctttctttag----------
|| |||||||||||  || |||| || || || | ||||| |||||||||||| ||||||||||||||     || ||  ||  |||   | |    | ||||     |  ||||| ||    | |||  |  |||   | |  |  |  |     || || ||| |   | || | | ||| |||            
GTTGAAATAGATGGACAGGTCTTAGGGAAGGGAACTGGATCAACATGGGATGATGCTAAAATGCAGgtattaactctttgttgttttcgcttttttcttttatggcctacttatgttttttctccttacataaattttatgccccttacttttttctg-agtactgaccctttggactttttttttttttgtacttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193545629|gb|FK500804.1|FK500804
EST:     ATCTTTGGTAAAGGCATTGGATTAACATGGGATGAGGCTAAAATGTCTAG                         GCTGCCGAGAAGGCACTTGGAAATCTAAGATCAAAGCTTGGCCAAAGCAT
genomic: ATCTTTGGTAAAGGCATTGGATTAACATGGGATGAGGCTAAAATG-C-AGgtctgttgtt ... ctttctttagGCTGCCGAGAAGGCACTTGGAAATCTAAGATCAAAGCTTGGCCAAAGCAT
EST: gi|193717591|gb|FK652905.1|FK652905
EST:     AGATCTTTGGTAAAGGCATTGGATTAACATGGGATGAGGCTAAAATGCAG                         GCTGCCGAGAAGGCACTTGGAAATCTAAGATCAAAGCTTGGCCAAAGCATT
genomic: AGATCTTTGGTAAAGGCATTGGATTAACATGGGATGAGGCTAAAATGCAGgtctgttgtt ... ctttctttagGCTGCCGAGAAGGCACTTGGAAATCTAAGATCAAAGCTTGGCCAAAGCATT
EST: gi|193695699|gb|FK633905.1|FK633905
EST:     AGATCTTTGGTAAAGGCATTGGATTAACATGGGATGAGGCTAAAATGCAG                         GCTGCCGAGAAGGCACTTGGAAATCTAAGATCAAAGCTTGGCCAAAGCATT
genomic: AGATCTTTGGTAAAGGCATTGGATTAACATGGGATGAGGCTAAAATGCAGgtctgttgtt ... ctttctttagGCTGCCGAGAAGGCACTTGGAAATCTAAGATCAAAGCTTGGCCAAAGCATT
EST: gi|193669727|gb|FK614105.1|FK614105
EST:     AGATCTTTGGTAAAGGCATTGGATTAACATGGGATGAGGCTAAAATGCAG                         GCTGCCGAGAAGGCACTTGGAAATCTAAGATCAAAGCTTGGCCAAAGCATT
genomic: AGATCTTTGGTAAAGGCATTGGATTAACATGGGATGAGGCTAAAATGCAGgtctgttgtt ... ctttctttagGCTGCCGAGAAGGCACTTGGAAATCTAAGATCAAAGCTTGGCCAAAGCATT