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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCTGGTTACTCGGGGGTTTCATTCCATCAAGATTTACTTAGGGTAGAGCTGGGGGATATTTTACTAATGGATGGCGGGGAACCACAATTATTTGACCGgtaggatttctgtttttggttattttacttgcatttgcaaattagtaaaaaaagaaaaaaatattttctgacattttatctacattcaagccttgaaacc...

Basic information

species Glycine max
transcript GLYMA13G19450.1
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193625610|gb|FK577878.1|FK577878
EST:     GGCGGGGAACCACAATTATTTGACCG                         GCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
genomic: GGCGGGGAACCACAATTATTTGACCGgtaggatttc ... atcgtggcagGCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
EST: gi|208144232|gb|GD941087.1|GD941087
EST:     GGCGGGGAACCACAATTATTTGACCG                         GCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
genomic: GGCGGGGAACCACAATTATTTGACCGgtaggatttc ... atcgtggcagGCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
EST: gi|208117555|gb|GD917797.1|GD917797
EST:     GGCGGGGAACCACAATTATTTGACCG                         GCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
genomic: GGCGGGGAACCACAATTATTTGACCGgtaggatttc ... atcgtggcagGCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
EST: gi|213590895|gb|DB975109.1|DB975109
EST:     CTGGGGGATATTTTACTAATGGATTGCGGGGAACCACAATTATTTGACCG                         GCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
genomic: CTGGGGGATATTTTACTAATGGATGGCGGGGAACCACAATTATTTGACCGgtaggatttc ... atcgtggcagGCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
EST: gi|16283915|gb|BI945808.1|BI945808
EST:     CTGGGGGATATTTTACTAATGGATGGCGGGGAACCACAATTATTTGACCG                         GCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
genomic: CTGGGGGATATTTTACTAATGGATGGCGGGGAACCACAATTATTTGACCGgtaggatttc ... atcgtggcagGCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
EST: gi|207711749|gb|GD693129.1|GD693129
EST:     GGCGGGGAACCACAATTATTTGACCG                         GCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
genomic: GGCGGGGAACCACAATTATTTGACCGgtaggatttc ... atcgtggcagGCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
EST: gi|208293166|gb|GE096402.1|GE096402
EST:     GGCGGGGAACCACAATTATTTGACCG                         GCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
genomic: GGCGGGGAACCACAATTATTTGACCGgtaggatttc ... atcgtggcagGCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
EST: gi|208089488|gb|GD886581.1|GD886581
EST:     CGGGGAACCACAATTTATTTTGACCG                         GCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGG
genomic: CGGGGAACCACAA-TTA-TTTGACCGgtaggatttc ... atcgtggcagGCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGG
EST: gi|193378440|gb|FK343773.1|FK343773
EST:     GGCGGGGAACCACAATTATTTGACCG                         GCACGCGGCTAGTAGTTGTCTTAGAAAGGCTGGGGAGACTCACGACACGGT
genomic: GGCGGGGAACCACAATTATTTGACCGgtaggatttc ... atcgtggcagGCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
EST: gi|208133908|gb|GD931841.1|GD931841
EST:     ACAATTATTTGACCG                         GCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
genomic: ACAATTATTTGACCGgtaggatttc ... atcgtggcagGCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
EST: gi|193335235|gb|FK297975.1|FK297975
EST:     GGGAACCACAATTATTTGACCG                         GCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
genomic: GGGAACCACAATTATTTGACCGgtaggatttc ... atcgtggcagGCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
EST: gi|193455505|gb|FK420910.1|FK420910
EST:     GGCGGGGAACCACAATTATTTGACCG                         GCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
genomic: GGCGGGGAACCACAATTATTTGACCGgtaggatttc ... atcgtggcagGCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
EST: gi|207689392|gb|GD671337.1|GD671337
EST:     GGGAACCACAATTATTTGACCG                         GCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
genomic: GGGAACCACAATTATTTGACCGgtaggatttc ... atcgtggcagGCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
EST: gi|208123539|gb|GD924119.1|GD924119
EST:     GGCGGGGAACCACAATTATTTGACCG                         GCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
genomic: GGCGGGGAACCACAATTATTTGACCGgtaggatttc ... atcgtggcagGCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
EST: gi|207807423|gb|GD777520.1|GD777520
EST:     CGGGGAACCACAATTTATTTTGTACCG                         GCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGG
genomic: CGGGGAACCACAA-TTA-TTTG-ACCGgtaggatttc ... atcgtggcagGCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGG
EST: gi|193374652|gb|FK342894.1|FK342894
EST:     GGCGGGGAACCACAATTATTTGACCG                         GCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT
genomic: GGCGGGGAACCACAATTATTTGACCGgtaggatttc ... atcgtggcagGCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGCTGGTTACTCGGGGGTTTCATTCCATCAAGATTTACTTAGGGTAGAGCTGGGGGATATTTTACTAATGGATGGCGGGGAACCACAATTATTTGACCGgtaggatttctgtttttggttattttacttgcatttgcaaattagtaaaaaaagaaaaaaatattttctgacattttatctacattcaagccttgaaacc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaaa