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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCAAATTGTGGGATGAGTGATGCAATCGGGCCAGTTAATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAGgcaagtgttgtgaatttatatactttaactaaaaatatcatgtttccattatttgcttcctcttctaagaaatgttttatcaaaaataaaagtcatacacctctacctattctgcag

Basic information

species Glycine max
transcript GLYMA13G08160.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G08160.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os01g43150.2 (Oryza sativa), 5'ss of exon 7
GTATCAAATTGTGGGATGAGTGATGCAATCGGGCCAGTTAATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAGgcaagtgttgtgaatttatatactttaactaaaaatatcatgtttccattatttgcttcctcttctaagaaatgttttatcaaaaataaaagtcatacacctctacctattctgcag
|||||||||||||||||||||||||| || || || ||  || | ||||| || ||||||  ||| ||||| ||| | || ||||| |||| |  | ||    | | |||| |||||     |  |    | ||||  ||          |  | ||||        | ||       || ||  |       | |  |        
GTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAACGGCCAAGTGTTGAGATGCAATCAAGGATAGATGCTGAGgtacatttt-catagtaatattctttat----agtttggctatttcatttggccaggcattagtttaaggtgctccctttc-----ctaatgtttttttgtcatgctaac-------

upper sequence: GLYMA13G08160.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G156069_T01 (Zea mays), 5'ss of exon 15
GTATCAAATTGTGGGATGAGTGATGCAATCGGGCCAGTTAATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAGgcaagtgttgtgaatttatatactttaactaaaaatatcatgtttccattatttgcttcctcttctaagaaatgttttatcaaaaataaaagtcatacacctctacctattctgcag
|||||||| ||||||||||||||||| ||||| || ||  || | |||||||||||||||   || ||||| ||| | || ||||| |||| |  | |    |    |   |  |  ||| | || ||  ||  |  | |||||  ||  |  | ||       |||  | |  ||  |    |  |    | ||            
GTATCAAACTGTGGGATGAGTGATGCTATCGGTCCTGTGCATGTGAAAGAGCGACCAAGTGTAGAGATGCAATCAAGGATAGATGCTGAGgtacttctccatagaccactcaaatatactgataacattttggctgtactatttcatttttgctata-----catttagtgagcaaatagtagctcattgttgta------------

upper sequence: GLYMA13G08160.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G53170.1 (Arabidopsis thaliana), 5'ss of exon 15
GTATCAAATTGTGGGATGAGTGATGCAATCGGGCCAGTTAATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAGgcaagtgttgtgaatttatatactttaactaaaaatatcatgtttccattatttgcttcctcttctaagaaatgttttatcaaaaataaaagtcatacacctctacctattctgcag
||||| | ||||||||||||||| ||||| || |||||| ||||||||||  ||||||| ||||| ||||| ||||| |||||||| |||| |     | |  ||| |  |  ||||  |       |||  |  |      ||| | |    |||||  | |  | |        | | |    || |                  
GTATCGAGTTGTGGGATGAGTGAGGCAATAGGACCAGTTCATATAAAAGAAAGACCAAGCTCTGATATGCAATCACGCATTGATGCCGAGgtagagactctctattcactttttttagttccctcattcaaatccca-----ttggtcctaaatctaatcattcatctggtggtgttgatacatgtatag-----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193725520|gb|FK660612.1|FK660612
EST:     ATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCGCGTATTGATGCAGAG                         GTTGTGAAACTCCTTAGAGAAGCATATGATCGCGT
genomic: ATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAGgcaagtgttg ... tattctgcagGTTGTGAAACTCCTTAGAGAAGCATATGATCGCGT
EST: gi|10843451|gb|BF066749.1|BF066749
EST:     ATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAG                         GTTGTGAAACTCCTTCGAGAAGCATATGATCGTGTGAAAGCCCTTTTGAAA
genomic: ATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAGgcaagtgttg ... tattctgcagGTTGTGAAACTCCTTAGAGAAGCATATGATCGCGTGAAAGCCCTTTTGAAA
EST: gi|207799231|gb|GD768230.1|GD768230
EST:     NAAAAGTTTAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAG                         GTTGTGAAACTCCTTAGAGAAGCATATGATCGCGTGAAAGCCCTTTTGAAA
genomic: TAAAAG---AGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAGgcaagtgttg ... tattctgcagGTTGTGAAACTCCTTAGAGAAGCATATGATCGCGTGAAAGCCCTTTTGAAA
EST: gi|26058971|gb|CA801885.1|CA801885
EST:     ATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAG                         GTTGTGAAACTCCTTAGAGAAGCATATGATCGCGTGAAAGCCCTTTTGAAA
genomic: ATATAAAAGAGCGACCAAGTTCTGAAATGCAGTCACGTATTGATGCAGAGgcaagtgttg ... tattctgcagGTTGTGAAACTCCTTAGAGAAGCATATGATCGCGTGAAAGCCCTTTTGAAA