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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGgtatgatgtcttacattcccggtttctgttagtatacttgaattttgtaccaaaattctactgccagcacctgagcacaaattattctaattgtaagctt...

Basic information

species Glycine max
transcript GLYMA12G30540.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G30540.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os02g32570.1 (Oryza sativa), 5'ss of exon 14
AGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGgtatgatgtcttacattcccggtttctgttagtatacttgaattttgtaccaaaattctactgccagcacctgagcac----aaattattctaattgtaagctt
| || || || |||||  | ||  | || |||||||||||||| |||||||| ||||| || |||||||| |||||||| || |||||||||||  | |||| |  | |     | || |  ||   |   || ||     |||||  ||||||     |      |||  || || |     | | ||      || ||  ||
AATTCGTGGAACAAGGAAGGGTCTTGCACAATTATGCTTCAATTTTGGAGTTGCTTTTGCGCCTTCGGCAGTGTTGTGACCACCCATTTCTTGTTCTTAGgt-tagttttcagaagtcacaatta--gcctgtttaaccagatttttcaccaaacaaagataaat-gcatttgtgctctccagagtaataggttctgaaaattt

upper sequence: GLYMA12G30540.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G057504_T01 (Zea mays), 5'ss of exon 3
AGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGgtatgatgtcttacattcccggtt----------tctgttagtatacttgaattttgtaccaaaattctac-----tgccagcacct--gagcacaaattattc-taattgtaagctt----------------------------------------------
| ||||||||||||||  | ||||| || || ||||||||||| |||||||||||||| || ||  ||||||| |||||||||||||| ||| | ||||||| || || | | || | |                ||||||   |||||||| |||| |     ||  |||     |  ||  | ||   |  ||  |  ||   || || |   |||                                              
AATTTGTTGAGCAAGGAAGGGTTCTGCACAACTATGCTTCAATTTTGGAGTTACTTTTGCGCCTAAGGCAATGCTGTGATCATCCATTCCTTATTATGAGgtttgttgccatgcaatgctatccataacagtagcctgttatggtacttgaaatttggatttgtatcttacatgaatagcaatatcttttaaaactgaacatcgatatttatggtcttttgttgtcaattacctattgatgatggagttttttttggttgccag

upper sequence: GLYMA12G30540.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G22750.1 (Arabidopsis thaliana), 5'ss of exon 14
AGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGgtatgatgtcttacattcccggtttctgttagtatacttgaattttgt---accaaaattctactgccagc--acctga-gcacaa-attattctaattgtaagctt
| |||||||| |||||    ||||||||||| |||||||| ||  ||||  | ||||| |||||||| |||||||||||||| |||||| | |||||||||| ||   | ||||   |    |||   ||||||||  |  |  |||        || ||| |  || |    | |||  |||  |  || |   || | |      
AATTTGTTGAACAAGGCAAAGTTCTTCATAACTATGCTTCGATCCTGGAACTGCTTTTGCGTCTTCGACAATGTTGTGATCACCCATTTTTAGTAATGAGgtgtggc-ttttactggct---ttttatttagtatagatacacattgctgggtttaacttccatggctacttaatctgttgcatgacgttgtataaaatatcca---

upper sequence: GLYMA12G30540.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv06s0061g01190.t01 (Vitis vinifera), 5'ss of exon 14
AGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGgtatgatgtcttacattcccggtttctgttagtatacttgaattttgtaccaaaattctactgccagcacctgagc-acaaattattctaattgtaagctt--
| |||||||||||||| || |||||||||||||||||||| || |||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||||| || | |||||| |        ||  |||||    | || |  ||  | |      |  |||  |       ||     || ||   |||  |     |  
AATTTGTTGAGCAAGGACGGGTTCTTCATAATTATGCTTCTATTTTGGAGTTGCTTTTATGTCTTCGCCAATGTTGTGATCATCCATTTCTTGTGATGAGgtttg-tctcttacttgggtttgctccattagtga--tggattcatgccctagtgcagtggtgctggtgatgatgctgttgataataacaatgatggtggtgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7589119|gb|AW704900.1|AW704900
EST:     TTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAG                         TCGAGGTGATACTCAAGAATTTGCGGATCTAAACAAACTAGCCAAGCGCTT
genomic: TTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGgtatgatgtc ... attcatttagTCGAGGTGATACTCAAGAATTTGCCGATCTAAACAAACTAGCTAAGCGCTT