Sequence
atgc intronic sequence ATGC exonic sequenceCATACATACTTGGAGAGTTTGGACACCTTCTAGCAAGACGACCTGGATGCAGTCCGAAGGAACTATTTAGCATTATACATGAGAAGCTTCCTACTGTATCgtaaggaatcccttatttatttcatagttgaaatgcattttttcctagatatcttacaagaggtgctttattttcag
Basic information
species | Glycine max |
transcript | GLYMA12G30520.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G22780.1 (Arabidopsis thaliana), 5'ss of exon 15
CATACATACTTGGAGAGTTTGGACACCTTCTAGCAAGACGACCTGGATGCAGTCCGAAGGAACTATTTAGCATTATACATGAGAAGCTTCCTACTGTATCgtaaggaatcccttatttatttcatagttgaaatgcattttttcctagatatcttacaagaggtgctttattttcag--------
| || || | || |||| ||| |||||| |||| |||| ||||||||||||| | | ||||| |||||||| ||||||||||||||||||| |||||||||||| | | || | | ||| | || | | | ||| | || | | ||| ||
CTTATATTTTGGGGGAGTATGGTCACCTTTTAGCTAGACAACCTGGATGCAGTGCAAGTGAACTCTTTAGCATCTTACATGAGAAGCTTCCTACAGTATCgtaagga---caacacaaatgttg-aattgcgctcttcttgtctttgggtatgtcttaattgctttttttcgttttttttctcag
upper sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G22770.2 (Arabidopsis thaliana), 5'ss of exon 16
CATACATACTTGGAGAGTTTGGACACCTTCTAGCAAGACGACCTGGATGCAGTCCGAAGGAACTATTTAGCATTATACATGAGAAGCTTCCTACTGTATCgtaaggaatcccttatttatttcatagttgaaatgcattttttcctagatatcttacaagaggtgctttattttcag--------
| || || | || |||| ||| ||||||||||| |||| ||||||||||||| | | ||||| |||||||| ||||||||||||||||||| ||||||||||| | | || | | ||| | | | | | ||| | || || | ||| ||
CTTATATTTTGGGGGAGTATGGTCACCTTCTAGCTAGACAACCTGGATGCAGTGCAAGTGAACTCTTTAGCATCTTACATGAGAAGCTTCCTACAATATCgtaagga---caacacaaatgttg-aattgcgctcttctcgtctttgggtatgtcttaatagctttttttcgttttttttctcag
upper sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 15
CATACATACTTGGAGAGTTTGGACACCTTCTAGCAAGACGACCTGGATGCAGTCCGAAGGAACTATTTAGCATTATACATGAGAAGCTTCCTACTGTATCgtaaggaatc----ccttat--------ttatttcatagttgaaatgcattttttcctagatatcttacaagaggtgctttattttcag
| || | |||||||| | | |||||| | || |||||||| || || |||||||||||| | ||| |||| || ||||||||||| |||||||||||||||| || |||| | |||| || | ||| || | |||||| || | | | || ||||||
CTTATCTCCTTGGAGAATACAGCCACCTTTTGGCCAGACGACCAGGGTGTAGTCCGAAGGAAATTTTTGGCATCATTCATGAGAAGCTCCCTACTGTATCgtaagagctcttagccttgcatctgttgtcttttcttatacgttctgcccttcaatcctaggatcttaaaacacatattgtactttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|5058266|gb|AI736742.1|AI736742EST: CTATTTAGCATTATACATGAGAAGCTTCCTACTGTATC GACTTCTACTATTTCTATTCTTTTGTCAACATATGCTAAAATTCTGATGCA
genomic: CTATTTAGCATTATACATGAGAAGCTTCCTACTGTATCgtaaggaatc ... ttattttcagGACTTCTACTATTTCTATTCTTTTGTCAACATATGCTAAAATTCTGATGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATACATACTTGGAGAGTTTGGACACCTTCTAGCAAGACGACCTGGATGCAGTCCGAAGGAACTATTTAGCATTATACATGAGAAGCTTCCTACTGTATCgtaaggaatcccttatttatttcatagttgaaatgcattttttcctagatatcttacaagaggtgctttattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC