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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTATATATGTGCTGGAAATATTGATAAAACTGTTGAAATTTGGTCAAGGAGCCTGTCAAATGAGACCGAGGGAAAATCTTATGTTGACCTTCTTCAGgtaagattgacctgtaactgttataaaattctcatttaccaatattgctgctagaaaattgacatgattatctttgttag

Basic information

species Glycine max
transcript GLYMA12G01290.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G01290.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G152963_T01 (Zea mays), 5'ss of exon 15
GTGTTATATATGTGCTGGAAATATTGATAAAACTGTTGAAATTTGGTCAAGGAGCCTGTCAAATGAGACCGAGGGAAAATCTTATGTTGACCTTCTTCAGgtaagattgacctgtaactgttataaaattctcatttaccaatattgctgctagaaaattgaca--tgattatctttgttag----
 |||||||| ||||||||||||||||||||| |||||||||| |||||  | | | ||  |  |||    |  || ||   ||||||||| ||||| |||||| ||||    |||||         | ||| ||||    |  || ||| | ||| | ||   |  ||| ||   | |  |     
CTGTTATATTTGTGCTGGAAATATTGATAAAGCTGTTGAAATATGGTCCCGCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAGgtacgatt---ttgtaat--------agttcacattctatagcatggctcccagacagttcctaattgactagtgtggaaatgcag

upper sequence: GLYMA12G01290.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G035985_T03 (Zea mays), 5'ss of exon 15
GTGTTATATATGTGCTGGAAATATTGATAAAACTGTTGAAATTTGGTCAAGGAGCCTGTCAAATGAGACCGAGGGAAAATCTTATGTTGACCTTCTTCAGgtaagattgacctgtaactgttataaaattctcatttaccaatattgctgctagaaaattgaca--tgattatctttgttag-----
 |||||||| ||||||||||||||||| ||| |||||||||| |||||  | | | ||  |  |||    |  || ||  |||||||||| ||||| |||||| | |||   | |||       | | | | || |    |  |||||| |   | ||||   |  ||||||  | ||  |      
CTGTTATATTTGTGCTGGAAATATTGACAAAGCTGTTGAAATATGGTCCCGCACCTTGAAATCTGAAGATGGTGGGAAGACTTATGTTGATCTTCTCCAGgtatggttg---tataata-----agagtgcacaatctatagcattgctcccgaacaattcctaattgattag-tatgcaaatgcag

upper sequence: GLYMA12G01290.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv13s0158g00140.t01 (Vitis vinifera), 5'ss of exon 15
GTGTTATATATGTGCTGGAAATATTGATAAAACTGTTGAAATTTGGTCAAGGAGCCTGTCAAATGAGACCGAGGGAAAATCTTATGTTGACCTTCTTCAGgtaagattgacctgtaactgttataaaattctcatttaccaatatt-gctgctagaaaattgacatgattatc---tttgttag
 |||||||||||||||||||||||||||||||| || || ||||||||  |||| ||| |   ||||   || ||||| || ||||||||  |||||||||||||       ||   || ||  ||| ||    |  ||   ||||    |||||||| |    |   || |    ||  ||||
TTGTTATATATGTGCTGGAAATATTGATAAAACGGTGGAGATTTGGTCCCGGAGTCTGACTGCTGAGCATGAAGGAAAGTCCTATGTTGATGTTCTTCAGgtaag-----tatgctgcttttg-aaagtttgtttgcacatttattcaaagctagaaattcattactcttgttcgtttgattag