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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAGgttgtttatctactgtgattaagccattatgaagattagtaatataatattcctgcttcatgatcattattgttgacatatgaaatgtttctttatgtgg...

Basic information

species Glycine max
transcript GLYMA11G35460.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 15
GGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAGgttgtttatctactgtgattaagccattatgaagat-tagtaatataatattcctgcttcatgatc--attat-tgttgacatatgaaatgtttctttatgtgg
|| ||||| || |||||  | |||||||| ||||||||||| || || |||||||||||||| || ||||||||||| || ||||||||    | |  | |    | ||  |||  |    || || ||   |    ||  | |      ||    || | | ||| | ||  |      | |||     |
GGAGCTGTCAACTTTGCGCTCATGATGTCACAAATGGAGGGGGGCTGTCCAGTTGATTACAATACTATAACTGATCTCTTCCTTCAGgtatccttttaattcatttcaatgcatagtcggtatgtaatacctttgcttttttaccatgaaattcagttgtgtcttgccttaccatgcccattttttaacag

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 13
GGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAGgttgtttatctactgtga----ttaagccattatgaagattagtaatataatattcct-gcttcatgatcattattgttg-acatatgaaatgtttctttatgtgg-----------------------------------
|| ||||| || |||||||| |||||||| ||||||||||||||||| ||||| || |||||||| || |||||||| || ||||||||   || | || | | |     |||    || |    | ||||| ||||| |||| | | |   ||   | | |   || |  | |   |   |||  |||||                                     
GGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAGgtatcttttgtattattagcatataaattcttttctgtagtagta-tataaaattctttgttgtctgggaactctccatgcagttcttttagtcttcactatgtaatttggttttttgctttggcttacattcttcaacag

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 15
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 15
GGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAGgttgttta-tctactgtgattaagccattat--gaagattagtaat-ataatattcctgctt-catgatcat-tattgttgacata-----tgaaatgtttctttatgtgg--------------
|| || || |||||||||||||||||||| |||||||| |||||||  |||||||| ||||||||||| |||||||| ||||||||||| | | | | || | ||  |   ||| |||  | || | | || |  |  || ||||   | ||  ||  | ||  || ||  ||     | |  || || ||| | |                
GGAGCAGTAAATTTTGCATTAATGATGTCTCAAATGGAAGGAGGTTCTCCAGTTGACTACAACACCATCACTGATCTTTTTCTTCAGgtaggtcaatatattctgtatgcaccaatatttgtagctcattacttgttctactcctatatacagaattgtatacagtagatgtaaattatcatgtgcttatttgtctatttgtgcatattcag

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 15
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 15
GGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAGgttgtttatctactgtgattaagccat-tatgaagattagtaatataatattcctgcttcatgatcattattgttgacatatgaaat-gtttctttatgtgg--
|| || || |||||||| ||||||||||| |||||||| |||||||| |||||||| |||||||| || |||||||| || |||||||| |   |  ||    || ||  |  | ||   | | | |||    | || |  |    || ||    |||  |   |  ||| | |   || |  || |    
GGAGCAGTAAATTTTGCTTTAATGATGTCCCAAATGGAAGGAGGTTGTCCAGTTGACTACAACACTATCACTGATCTTTTCCTTCAGgt-gaacacgta----gaatatactgtgtacataaaattgtatctcattacttgtttcacaagagagctatcatgtgctaatgtacttacttttgcatattcag

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 15
GGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAGgttgtttatctactgtgattaagccattatgaagattagtaatataatattcctgcttcatgatcattattgttgacatatgaaatgtttctttatgtgg--
|| ||||| ||||||||  |||||||||| ||||||||||||||||| ||  ||||||  || || ||||||||||| ||||||||||||  |||| |    || |    | ||||     ||   |||||| ||| ||     || | |   || ||| | ||  ||    | | | |  |    |  
GGAGCTGTAAATTTTGCGCTAATGATGTCTCAAATGGAGGGAGGTTGTCCCATTGATTTTAATACGATAACTGATCTCTTTCTTCAGgtttgttatgtgac-tgctgcctctattaattgaatatataatatcataatcactgatctt-acattttttggtaaccaatcttgtatctttccacaccgca