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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAAAGGTTTTGTTGCTAATTCCTTTTACAGTGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACAGCGgtagggttcttattttgaatttgaataaattatgcataatatattcttaagtaaaaattgattcaattatatgaactattaaaaccaagtaacatatcta...

Basic information

species Glycine max
transcript GLYMA11G15530.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15530.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os04g41490.1 (Oryza sativa), 5'ss of exon 17
GCAAAAGGTTTTGTTGCTAATTCCTTTTACAGTGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACAGCGgtagggttcttattttgaatttgaataaattatgcataatat-attcttaagtaaaaattg-attcaattatatgaactattaaaaccaagtaacatatcta
|| ||||| ||||| |||||||| || || | ||| ||| | || || || || ||||||||||| ||||| ||||||||||| |||||||||||||||||| |  |||   | | ||      ||   | |||||||  | ||  ||       |  || |||  |  | |  || |  | |||     | |||||    
GCCAAAGGCTTTGTCGCTAATTCTTTCTATACTGGCTTGACTGCCACCGAATTCTTCTTCCATACGATGGGTGGGCGAGAAGGTCTTGTTGATACAGCGgtatg--tctatgtataaaaccatctattgtttgcataagttgatatttgcactctatctgtatttcagcacaaaaatttcttaaatttgctcacatagact

upper sequence: GLYMA11G15530.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G080176_T01 (Zea mays), 5'ss of exon 17
GCAAAAGGTTTTGTTGCTAATTCCTTTTACAGTGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACAGCGgtagggttcttattttgaatttgaataaattatgcataatatattcttaagtaa--aaattgattcaattatatgaactattaaaaccaagtaacatatcta--
|| |||||||||||||||||||| || || | ||| ||| | |||||||||||||||||||| |||||||| || |||||||| |||||||| || |||||| |   || | ||| ||  ||  |   |  ||||| | || || || |||    || | || || | |  | |   | |    ||  | ||  | |      
GCTAAAGGTTTTGTTGCTAATTCATTCTATACTGGTTTGACTGCTACTGAGTTTTTCTTCCACACAATGGGTGGACGAGAAGGTCTTGTTGACACGGCGgtatg--cctaaatttaaacatgtttctttcttgcatca-atgtttttgagtcgtgaagtcgagtcgagtcga-gtcgtgtagctactgactagtagactagtg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207788036|gb|GD759706.1|GD759706
EST:     AGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACAGCG                         GTTAAAACTGCAGACACGGGATATATGTCTCGTCAATTAATGAAATCCCTA
genomic: AGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACAGCGgtagggttct ... gtctttgcagGTTAAAACTGCAGACACGGGATATATGTCTCGTCAATTAATGAAATCCCTA