1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
AGAGCAACAGCGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGTTGCCTCCTGGTGGACTGGCAGTTCTAAATCCAAAATTAACGATTGTGAGGAAGgtattgaaaaaatatttttgatcacttgcaacctgtgctatttattcatgcggccttcacgcaattttgtacttgaatgttaaagtggctttcctctacttttcctttttacctcttaaaagggggcttacaaaatgcaaagtttgtaagtgattacatttacatgtctgggtgcag
species | Glycine max |
transcript | GLYMA11G11490.2 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CTCCTGGTNGACTNNNAGTTCTANATCCAAAATTAACGATTGTGANGAAG CTTTCATCAAGTGCAGCTAATGCTTCATCTAATGGGAACGGTCCTTCAGAAEST: gi|7028762|gb|AW458545.1|AW458545
genomic: CTCCTGGTGGACTGGCAGTTCTAAATCCAAAATTAACGATTGTGAGGAAGgtattgaaaa ... ctgggtgcagCTTTCATCAAGTGCAGCTAATGCTTCATCTAATGGGAACGGTCCTTCAGAA
EST: CTCCTGGTGGACTGGCAGTTCTAAATCCAAAATTAACGATTGTGAGGAAG CTTTCATCAAGTGCAGCTAATGCTTCATCTAATGGGAACGGTCCTTCAGAAEST: gi|208175474|gb|GD976869.1|GD976869
genomic: CTCCTGGTGGACTGGCAGTTCTAAATCCAAAATTAACGATTGTGAGGAAGgtattgaaaa ... ctgggtgcagCTTTCATCAAGTGCAGCTAATGCTTCATCTAATGGGAACGGTCCTTCAGAA
EST: CTCCTGGTGGACTGGCAGTTCTAAATCCAAAATTAACGATTGTGAGGAAG CTTTCATCAAGTGCAGCTAATGCTTCAT
genomic: CTCCTGGTGGACTGGCAGTTCTAAATCCAAAATTAACGATTGTGAGGAAGgtattgaaaa ... ctgggtgcagCTTTCATCAAGTGCAGCTAATGCTTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGCAACAGCGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGTTGCCTCCTGGTGGACTGGCAGTTCTAAATCCAAAATTAACGATTGTGAGGAAGgtattgaaaaaatatttttgatcacttgcaacctgtgctatttattcatgcggccttcacgcaattttgtacttgaatgttaaagtggctttcctctacttttcctttttacctcttaaaagggggcttacaaaatgcaaagtttgtaagtgattacatttacatgtctgggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA