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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGGATAAGATTGGAGAATGTGCTTATTGTCAAAGAGGCTGGTACAAATTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttctaatatgtttattagtttgtcttagtttatttccatgggatgtttattttgaatatgtaaaaagcttttgcacttcactcaattaattcaac...

Basic information

species Glycine max
transcript GLYMA11G06900.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06900.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv04s0023g01300.t01 (Vitis vinifera), 5'ss of exon 15
GTTTGGGATAAGATTGGAGAATGTGCTTATTGTCAAAGAGGCTGGTACAAATTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttc-taatatgtttattagtttgtcttagtttatttccatgggatgtttattttgaatatgtaaaaagcttttgcacttcactcaattaattcaac--
 ||||| ||||||||||||||||| ||  |  |||| ||||||| |||||| ||||||||||||||||  ||||||||  | ||||||||||| || ||||||||||  |  ||| || || |   | || |  ||| ||| | || |     | | |    | | |         ||| |      ||  || |||      
CTTTGGCATAAGATTGGAGAATGTCCTCGTAATCAAGGAGGCTGATACAAAATTCAATTTTGGTGATAAGGGTTACTTGGCATTTGAACACATAACATGGgtaagtttattttatattaatga---tatccttttttgttttcttgtgcgcaatgtatctggttttttttttttccttgtagcaggttccttttattttttat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254314276|gb|GR831905.1|GR831905
EST:     ATTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTATGTCCTGAGGAG
genomic: ATTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTATGTCCTGAGGAG
EST: gi|208325405|gb|GE118429.1|GE118429
EST:     ATTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTAATGTCCTGAGGA
genomic: ATTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTA-TGTCCTGAGGA
EST: gi|33389033|gb|CA852240.1|CA852240
EST:     ATTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTATGTCCTGAGGAG
genomic: ATTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTATGTCCTGAGGAG
EST: gi|15814619|gb|BI786894.1|BI786894
EST:     ATTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTATGTCCTGAGGAG
genomic: ATTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTATGTCCTGAGGAG
EST: gi|18712538|gb|BM522652.1|BM522652
EST:     CACATTACCTGG                         GCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTATGTCCTGAGGAG
genomic: CACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTATGTCCTGAGGAG