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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGATGGAACCCATAAGTGAGTGGACAGCTGACAATAATAGAATGGGAAAGCCTAATAGGAGTGTTTCTGAGCCAGATTTTGGTAGAACCCCAAGACAGgtgtgtgagtactatgaaaggtgtactgtgaagattttcaccttgctctgcatgtctttggtttacttgaaagttttgatggaaaagttctggttgatgtatcacag

Basic information

species Glycine max
transcript GLYMA11G03580.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G03580.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv00s0229g00030.t01 (Vitis vinifera), 5'ss of exon 10
TTCGATGGAACCCATAAGTGAGTGGACAGCTGACAATAATAGAATGGGAAAGCCTAATAGGAGTGTTTCTGAGCCAGATTTTGGTAGAACCCCAAGACAGgtgtgtg----agtactatgaaaggtgtactgtgaag-attttcaccttgctctgcatgtctttggtttacttgaaagttttgatggaaaagttctggttgatgtat-cacag--------------------------------------------
 || ||||| ||||||||||| |||||||||||    |||||||||   |  |||||||| |||||||| |||||||| |||||| |||| |||||||||||  ||     |   | | | ||     | | |     | |     |||| | || |||  |    | || | | ||     |  | ||| |   ||    |||||| || |                                             
ATCCATGGAGCCCATAAGTGAATGGACAGCTGATGGCAATAGAATGACCATACCTAATAGAAGTGTTTCAGAGCCAGACTTTGGTCGAACTCCAAGACAGgtcagtattttatctccaggcaaaacccattttctgttactagtttcttgatatgtatgcatggtttctaatcggaaaaaggggggaaaatgaaatga--aatgtatgcataatttctataaagtttaagaggttctatggacttatgaacaatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7591028|gb|AW706769.1|AW706769
EST:     AGCCTAATAGGAGTGTTTCTGACCCAGATTTTGGTAGAACCCCAAGACAG                         GAAACGACGTCACCTGATGCACAAGAAAAACCCCAGGCATCAGGGGGTACA
genomic: AGCCTAATAGGAGTGTTTCTGAGCCAGATTTTGGTAGAACCCCAAGACAGgtgtgtgagt ... tgtatcacagGAAACGACGTCACCTGATGCACAAGAAAAACCCCAGGCATCAGGGGGTACA