Sequence
atgc intronic sequence ATGC exonic sequenceACAGTTTGATAATGTTCTTATGGGTCTTCTACGAAGAATTTTGGATGATAATAAGCGGGTTCAAGAGGCTGCTTGTTCAGCTTTTGCAACGCTGGAAGAGgttctgactacaatttttgttcatttacccttaatgaattgattcaattacttgatttattttaaatttatataaatctgaaatttggtttactaaacttttatgatag
Basic information
species | Glycine max |
transcript | GLYMA10G42960.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G376731_T01 (Zea mays), 5'ss of exon 15
ACAGTTTGATAATGTTCTTATGGGTCTTCTACGAAGAATTTTGGATGATAATAAGCGGGTTCAAGAGGCTGCTTGTTCAGCTTTTGCAACGCTGGAAGAGgttc-tgac---tacaattt-ttgttcatttacccttaatgaattgattca--attact-tgatttattttaa-atttatataaatctgaaatttggtttactaaacttttatgatag-
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ACAATTTGATAAGATTCTCATGGGATTGCTAAGAAGGATATTGGATACTAACAAAAGAGTGCAAGAGGCTGCTTGTTCAGCGTTTGCAACTCTTGAAGAGgttaatgacatatatagtatgctttgttttttccccctgggaattgcataagaattagtattatgcatgcaagtaagtttgcagattctaatctgtacatattggttttctattttcag
upper sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 15
lower sequence: AT2G16950.1 (Arabidopsis thaliana), 5'ss of exon 15
ACAGTTTGATAATGTTCTTATGGGTCTTCTACGAAGAATTTTGGATGATAATAAGCGGGTTCAAGAGGCTGCTTGTTCAGCTTTTGCAACGCTGGAAGAGgttctgactacaatttttgttcatttacccttaatgaattgattcaat--tacttgatttattttaaatttatataaatctgaaatttggtttactaaacttttatgatag
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ACAATTTGAGAAAGTTCTTATGGGTCTTCTCCGCAGACTCTTGGATACGAACAAGCGGGTTCAGGAGGCTGCCTGTTCAGCTTTTGCAACTGTTGAAGAGgtac---ctgttggctttgcaatgtggtttttggtggcatttgtcaatgttggttgacc-atgtaaatcttctatgaacgtgtag--------------------------
upper sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 15
ACAGTTTGATAATGTTCTTATGGGTCTTCTACGAAGAATTTTGGATGATAATAAGCGGGTTCAAGAGGCTGCTTGTTCAGCTTTTGCAACGCTGGAAGAGgttctgactacaatttttgttcatttacccttaatgaattgattcaattacttgatttattttaaatttatataaatctgaaatttggtttactaaacttttatgatag
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ACAGTTTGACAAAGTTCTTAGGGGTCTTCTACGAAGGATATTGGATACCAACAAGCGGGTGCAAGAGGCTGCTTGTTCAGCTTTTGCCACACTCGAAGAGgtttctgtta------ttatgcagt-gtaattattacatt---tctgtctttagatatatctctagatcccaatgatt----gtttgatttaccatcag----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192327364|gb|FK019581.1|FK019581EST: ATAAGCGGGTTCAAGAGGCTGCTTGTTCAGCTTTTGCAACGCTGGAAGAG GAGGCTGCTGAAGAGTTGGCACCACGCTTGGAAATTATACTAAAGCACCTA
genomic: ATAAGCGGGTTCAAGAGGCTGCTTGTTCAGCTTTTGCAACGCTGGAAGAGgttctgacta ... tttatgatagGAGGCTGCTGAAGAGTTGGCACCACGCTTGGAAATTATACTAAAGCACCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACAGTTTGATAATGTTCTTATGGGTCTTCTACGAAGAATTTTGGATGATAATAAGCGGGTTCAAGAGGCTGCTTGTTCAGCTTTTGCAACGCTGGAAGAGgttctgactacaatttttgttcatttacccttaatgaattgattcaattacttgatttattttaaatttatataaatctgaaatttggtttactaaacttttatgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA