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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAGgtaatgcatatccacaatttttctcttctaaattttcattgatccaaagttgttatgcttgctgtctaacatggaggtaaatttgattattag

Basic information

species Glycine max
transcript GLYMA10G41940.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41940.2 (Glycine max), 5'ss of exon 15
lower sequence: AT1G57600.1 (Arabidopsis thaliana), 5'ss of exon 15
GAAACTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAGgtaa--tgcatatccacaatttttctc-ttctaaattttcattgatccaaa-gttgttatgcttg--ctgtctaacat---ggaggtaaatttgat-tattag
||| |||||||||||||||||||| || |||||||||||||| || ||  || |  | ||||||||| | |  |||| | |||| |  |  | |   |   ||||  ||  || ||||       |   || | |||   |  ||||  |   |||||||        | |||||||  |||   
GAAGCTTCTTTCATGGGCATGGTTAACATGTTTATTCTTCATGCCAGAAATGTTACTGAAATCAGCATCCAGTGCATATAAGgtcagttaaacaatgattgttttattcactccaaataactgaagcctcatatgttccaagtcttgaccacgctaacatttgaagaatgaatttgacgtat---

upper sequence: GLYMA10G41940.2 (Glycine max), 5'ss of exon 15
lower sequence: Vv00s0449g00010.t01 (Vitis vinifera), 5'ss of exon 9
GAAACTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAGgtaatgcatatccac--aatttttctcttcta-aattt---tcattgatccaaagttgttatgcttgctgtctaacatgg-aggta--aatttgattattag
||| |||||||||||||||||||| ||||||||||||||  | || ||| || |  | ||||||   ||||| ||||||||||| |||  |||   |  | ||  | | | ||  |||||   |||||   ||   | |  |   | |  | |||  | |   ||||    |||  |  | |  
GAAGCTTCTTTCATGGGCATGGTTAACGTGTTTATTCTTTGTTCCAGAGATGATACTGAAATCATTGGCAAATGCATTTCAGgtgatgtgtattttccgagttgctatttactctaatttacgtcattttccctctgattatcaacattttatcttgcttactaggttctgattgaaccaat--

upper sequence: GLYMA10G41940.2 (Glycine max), 5'ss of exon 15
lower sequence: Vv00s0507g00020.t01 (Vitis vinifera), 5'ss of exon 9
GAAACTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAGgtaatgcatatccac--aatttttctct--tctaaatt--ttcattgatccaaagttgttatgcttgctgtctaacatg-gaggta--aatttgattattag
||| |||||||||||||||||||| ||||||||||||||  | || ||| || |  | ||||||   ||||| ||||||||||| |||  |||   |  | ||  | | |  ||||| ||  ||||||   ||   | |  ||  | |  | |||  | |  |||||    |||  |  | |  
GAAGCTTCTTTCATGGGCATGGTTAACGTGTTTATTCTTTGTTCCAGAGATGATACTGAAATCATTGGCAAATGCATTTCAGgtgatgtgtattttccgagttgctatttactctaatttacttcattttccctctgattataaacattttatcttgcttacgaggttctgattgaaccaat--

upper sequence: GLYMA10G41940.2 (Glycine max), 5'ss of exon 15
lower sequence: Vv00s0581g00010.t01 (Vitis vinifera), 5'ss of exon 6
GAAACTTCTTTCATGGGCATGGTTGACGTGTTTATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAGgtaatgcatatccac--aatttttctcttcta-aattt---tcattgatccaaagttgttatgcttgctgtctaacatgg-aggta--aatttgattattag
||| |||||||||||||||||||| ||||||||||||||  | || ||| || |  | ||||||   |||||  |||||||||| |||  |||   |  | ||  | | | ||  |||||   |||||   ||   | |  |   | |  | |||  | |   ||||    |||  |  | |  
GAAGCTTCTTTCATGGGCATGGTTAACGTGTTTATTCTTTGTTCCAGAGATGATACTGAAATCATTGGCAAATACATTTCAGgtgatgtgtattttccgagttgctatttactctaatttacgtcattttccctctgattatcaacattttatcttgcttactaggttctgattgaaccaat--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019147|gb|CX705889.1|CX705889
EST:     TATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAG                         GCTCAGAGTTCTTTTGGAGAATGCATATTTCGTGAACTCAGTGCTGTTGCT
genomic: TATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAGgtaatgcata ... tgattattagGCTCAGAGTTCTTTTGGAGAATGCATATTTCGTGAACTCAGTGCTGTTGCT
EST: gi|58018861|gb|CX705603.1|CX705603
EST:     TATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAG                         GCTCAGAGTTCTTTTGGAGAATGCATATTTCGTGAACTCAGTGCTGTTGCT
genomic: TATTCTTCATCCCTGAGTTGGTTTTAAAATCAGCAGCAAAAGCATTTCAGgtaatgcata ... tgattattagGCTCAGAGTTCTTTTGGAGAATGCATATTTCGTGAACTCAGTGCTGTTGCT