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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTTGCTCGATCAATGCCAACAAGCGGTGCTCTGGACCGTGTTGCTAAAAAATTGAACCTCCCTTTCTTTGAGgcatgctttattttttttacaattctttcttcttaaaatattaatataaatgaaataggcttcacatatttttagacatagttctcaaataacaagagatgggccctggattcag

Basic information

species Glycine max
transcript GLYMA10G38590.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38590.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os10g11140.1 (Oryza sativa), 5'ss of exon 15
GGTCTTGCTCGATCAATGCCAACAAGCGGTGCTCTGGACCGTGTTGCTAAAAAATTGAACCTCCCTTTCTTTGAGgcatgctttattttttttacaattctttcttcttaaaatattaatataa-atgaaataggcttcacatatttttagacatagttctcaaataacaagagatgggccctggattcag
||||||||| ||||||||||||| || |||||||| || ||||| ||| | ||||||||  | || |||||||||| |   ||| |   |     ||||   | | | | |  | ||   | || |   |||||||         || ||||   |     ||  ||| |  | |||| | ||   | |||
GGTCTTGCTAGATCAATGCCAACGAGTGGTGCTCTTGATCGTGTAGCTGATAAATTGAATGTTCCGTTCTTTGAGgtac-ttttgtcagtg----aattgcatgtgcatgatttgtttgcaaaatagtcaataggccatg---gcttctagaagaa-----cagctaagacaatatggtcactt--tgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22541844|gb|BU091687.1|BU091687
EST:     GCGGTGCTCTGGACCGTGTTGCTAAAAAATTGAACCTCCCTTTCTTTGAG                         GTCCCCACTGGTTGGAAATTNTTTGGGAATCTTATGGATGCTGGGAATTTG
genomic: GCGGTGCTCTGGACCGTGTTGCTAAAAAATTGAACCTCCCTTTCTTTGAGgcatgcttta ... ctggattcagGTCCCCACTGGTTGGAAATTTTTTGGGAATCTTATGGATGCTGGGAATTTG
EST: gi|15203242|gb|BI426010.1|BI426010
EST:     GCGGTGCTCTGGACCGTGTTGCTAAAAAATTGAACCTCCCTTTCTTTGAG                         GTCCCCACTGGTTGGAAATTTTTTGGGAATCTTATGGATGCTGGGAATTTG
genomic: GCGGTGCTCTGGACCGTGTTGCTAAAAAATTGAACCTCCCTTTCTTTGAGgcatgcttta ... ctggattcagGTCCCCACTGGTTGGAAATTTTTTGGGAATCTTATGGATGCTGGGAATTTG
EST: gi|120494261|gb|EH222428.1|EH222428
EST:     GCGGTGCTCTGGACCGTGTTGCTAAAAAATTGAACCTCCCTTTCTTTGAG                         GTCCCCACTGGTTGGAAATTTTTTGGGAATCTTATGGATGCTGGGAATTTG
genomic: GCGGTGCTCTGGACCGTGTTGCTAAAAAATTGAACCTCCCTTTCTTTGAGgcatgcttta ... ctggattcagGTCCCCACTGGTTGGAAATTTTTTGGGAATCTTATGGATGCTGGGAATTTG