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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATAGCAACAAGAAAAAAGTATGTTAACTTGGTCAACTCTGTTAAGGATTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagttttattgctttcattatttcattattgtttactgttttgggggggtgggtgtcgtgtgggatatttactaatcctagaaatccatgaaactaag...

Basic information

species Glycine max
transcript GLYMA10G31310.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G31310.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv04s0023g00140.t01 (Vitis vinifera), 5'ss of exon 15
GATATAGCAACAAGAAAAAAGTATGTTAACTTGGTCAACTCTGTTAAGGATTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagttt-tattgctttcattattt--cattattgttt--actgttttggg-----ggggtgggtgtcgtgtgggatatttactaatccta--gaaatccatgaaactaag
|||||  |||||||  |||| ||||| || || ||||| || || ||||||||||||||| |||  ||| |||| || ||||||||||| || ||||||||||||| | | ||  | || ||  ||  |||| |||| |  |||||| |        |     | |     |  |||   |     ||| ||  ||||||            
GATATTCCAACAAGGCAAAAATATGTGAATTTTGTCAATTCAGTCAAGGATTCAGGGGGCACTGCTCATATATTCTCATCCATGCATGTGTCAGGAGAACgtgagtatatctttttctctttgatttacattcttgtatcaactgttctatatttatgaaccagttcataggcaggactgtagaatatcttactgaaatc------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207798665|gb|GD769078.1|GD769078
EST:     TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC                         AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: gi|6913037|gb|AW394501.1|AW394501
EST:     TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC                         AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: gi|23730712|gb|BU763451.1|BU763451
EST:     TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC                         AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: gi|19270278|gb|BM886534.1|BM886534
EST:     TTCAGGGGGCTCTGTCCATGTATTTTCCTCCATGCATGTCTCTGGAGAAC                         AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: gi|10252508|gb|BE820274.1|BE820274
EST:     TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTNNNGAAC                         AACTAGCCCAGATAAGTGGCATNCCTGCGATTCTTCGGTTTCCTCTCCCTG
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: gi|14011604|gb|BG726526.1|BG726526
EST:     TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC                         AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: gi|19345947|gb|BM890827.1|BM890827
EST:     TCTTTGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC                         AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
genomic: TC-AGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: gi|10231661|gb|BE800549.1|BE800549
EST:     TTCAGGGGGCTCTGTCCATGTATTTTCTTCCATGCATGTCTCTGGAGAAC                         AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCAGTTTCCTCTCCCTG
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: gi|22928753|gb|BU545892.1|BU545892
EST:     TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC                         AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: gi|21602012|gb|BQ612343.1|BQ612343
EST:     TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC                         AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: gi|7690977|gb|AW759112.1|AW759112
EST:     TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC                         AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGGTTCCTCTCCCTG
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: gi|31471412|gb|CD413440.1|CD413440
EST:     TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC                         AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: gi|33389135|gb|CA852342.1|CA852342
EST:     TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC                         AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATATAGCAACAAGAAAAAAGTATGTTAACTTGGTCAACTCTGTTAAGGATTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagttttattgctttcattatttcattattgtttactgttttgggggggtgggtgtcgtgtgggatatttactaatcctagaaatccatgaaactaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtggg