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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGCTACACGAATGGTCATTCAGTATGGGTGGGGACCTGATGACAGTCCTGCAATATATTACCGTAGTAATGCGgtatagacctttttacatgcatcttaactactactgttgaattgtttttttttttccatgttgattgtgtggcattgaaaagttagattgaattatttag...

Basic information

species Glycine max
transcript GLYMA10G30720.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30720.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv14s0030g02190.t01 (Vitis vinifera), 5'ss of exon 15
ATAGCTACACGAATGGTCATTCAGTATGGGTGGGGACCTGATGACAGTCCTGCAATATATTACCGTAGTAATGCGgtatagacctttttacatgcatcttaactactactgttgaattgtttttttttttccatgttgattgtgtggcattgaaaagttagattgaattatttag-------
|||||||| || ||||| || ||| |||| ||||| |||||||||||||||||| | || |||  ||| ||||||||||  |  | | ||     |   ||  ||||     |||    ||  | |  | ||  || |||||    |     | || || |  |||| ||   ||       
ATAGCTACGCGGATGGTGATCCAGCATGGATGGGGCCCTGATGACAGTCCTGCAGTTTACTACTATAGCAATGCGgtatgtatatctctaaccaaaagctacatact-----tga--cattggtatggtacccagtagattgatgtgttcccataatttggtatgaaatacccaggtcaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23731005|gb|BU763612.1|BU763612
EST:     ATGGGTGGGGACCTGATGACAGTCCTGCAATATATTACCGTAGTAATGCG                         GTTACGGCATTAAGCATGGGGGATGACCATGAATATGTGATGGCAGCTAAA
genomic: ATGGGTGGGGACCTGATGACAGTCCTGCAATATATTACCGTAGTAATGCGgtatagacct ... gttgacatagGTTACGGCATTAAGCATGGGGGATGACCATGAATATGTGATGGCAGCTAAA
EST: gi|7041885|gb|AW471779.1|AW471779
EST:     ATGGGTGGGGACCTGATGACAGTCCTGCAATATATTACCGTAGTAATGCG                         GTTACGGCATTAAGCATGGGGGATGACCATGAATATGTGATGGCAGCTAAA
genomic: ATGGGTGGGGACCTGATGACAGTCCTGCAATATATTACCGTAGTAATGCGgtatagacct ... gttgacatagGTTACGGCATTAAGCATGGGGGATGACCATGAATATGTGATGGCAGCTAAA