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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTGGAAGCTGGCGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgttttctcttctttccttttccttgtaaggttgaaaggagggaaactgggatgtactggcttgtggccttggacatctgcatatctcctaccctcttctattattattgcagctataataactactgctgcttctaccactcctaccctgttaaataagtatttaaaattggaacatttttttttatcatccataaag

Basic information

species Glycine max
transcript GLYMA10G27810.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G27810.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os01g21820.1 (Oryza sativa), 5'ss of exon 13
GTTGTGGAAGCTGGCGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgttttct-cttctttccttttccttgtaaggttgaaaggagggaaactgggatgtactggcttgtggccttggacatctgcatatctcctaccctcttctattattattgcagctataataactactgctgcttctaccactcctaccctgttaaataagtatttaaaattggaacatttttttttatcatccataaag
||  |   ||| || ||||| ||||||||||| ||||| ||||||||||| ||  ||||||||||||||||  | | ||  ||    | || ||||    ||| ||| |    || ||  |  | ||| ||| || |    |   | | | ||| |   |     |  |  |   | |                                                                                          
GTCATTTCAGCAGGTGGACTTCATGTAGTAGGAACAGAACGTCATGAATCTCGCAGAATTGATAATCAGgtaatatactgattgagctatcattgt----ttgcaagca----aattgcaagattctgcctt-tgacacaagctctttccgtattttgcatatgatcatggtcaaact------------------------------------------------------------------------------------------

upper sequence: GLYMA10G27810.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM5G880102_T01 (Zea mays), 5'ss of exon 3
GTTGTGGAAGCTGGCGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgttttctcttctttc--cttttccttgtaaggttgaaaggagggaaactgggatgtactg-gcttgtggccttggacatctgcatatctcctaccctcttctattattattgcagctataataactactgctgcttctaccactcctaccctgttaaataagtatttaaaattggaacatttttttttatcatccataaag
||  |   ||  || || || || |||||||| |||||||| |||||||||||  ||||||| ||||||||  | |  | ||    || || ||  |||  |  |   | |   |   || || |  |  |||||  || | ||  |  ||| ||  |  | |     |                                                                                                     
GTCATTACAGTAGGTGGGCTTCACGTAGTAGGAACAGAGCGCCATGAATCACGCAGAATTGACAATCAGgtaatatactattgaagctattgctgttaatatgcaggtgtgaacacaaggtatcttttctgcttgctgcatgggtgaattgc-tagtttgtgctaaacta----------------------------------------------------------------------------------------------------

upper sequence: GLYMA10G27810.1 (Glycine max), 5'ss of exon 15
lower sequence: AT4G01800.1 (Arabidopsis thaliana), 5'ss of exon 14
GTTGTGGAAGCTGGCGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgttttctcttctttccttttccttgtaaggttgaaaggagggaaactgggatgtactggcttgtggccttggacatctgca-tatctcctaccctcttctattattattgcagctataataactactgctgcttctaccactcctaccctgttaaataagtatttaaaattggaacatttttttttatcatccataaag
|| ||||||||||| ||||| || || || || |||||||| ||||||||||||||||| || |||||||||| ||         | || |  | |   ||       ||   | |  | |    |     |||   |    | ||| || ||| |  |   | | ||    |                                                                                               
GTGGTGGAAGCTGGTGGACTTCACGTGGTGGGGACAGAGCGGCATGAATCACGTCGAATAGACAATCAGgtttccttaatagatttgtttcaaggagattta-----tggttgattcaggttcctttctcagtgaaataaatcttcttcactatgttttgttcccctcatacag----------------------------------------------------------------------------------------------

upper sequence: GLYMA10G27810.1 (Glycine max), 5'ss of exon 15
lower sequence: EFJ15249 (Selaginella moellendorffii), 5'ss of exon 14
GTTGTGGAAGCTGGCGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgttttctcttctttccttttccttgtaaggttgaaaggagggaaactgggatgtactggcttgtggccttggacatctgcatatctcctaccctcttctattattattgcagctataataactactgctgcttctaccactcctaccctgttaaataagtatttaaaattggaacatttttttttatcatccataaag
||||| |  || || || || || ||  ||||||||||||| |||||||||||  |||||||||||||||| |  |   |||   | |||  ||||       || |    |  ||  | |  |                                                                                                                                               
GTTGTTGCTGCAGGTGGCCTTCACGTGATAGGCACAGAGCGCCATGAATCACGAAGAATTGATAATCAGgtatagtaaccttggatgttctctgtat------aacgccccatcctttgttacag----------------------------------------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA10G27810.1 (Glycine max), 5'ss of exon 15
lower sequence: EFJ08380 (Selaginella moellendorffii), 5'ss of exon 14
GTTGTGGAAGCTGGCGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgttttctcttctttccttttccttgtaaggttgaaaggagggaaactgggatgtactggcttgtggccttggacatctgcatatctcctaccctcttctattattattgcagctataataactactgctgcttctaccactcctaccctgttaaataagtatttaaaattggaacatttttttttatcatccataaag
||||| |  || || || || || ||  ||||||||||||| || ||||||||  |||||||||||||||| |  |   |||   | |||  || |       || |    |  ||  | |  |                                                                                                                                               
GTTGTTGCTGCAGGTGGCCTTCACGTGATAGGCACAGAGCGCCACGAATCACGAAGAATTGATAATCAGgtatagtaaccttagatgttctctgcat------aacgccccatcctttgttacag----------------------------------------------------------------------------------------------------------------------------------------------