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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAATTGAAGAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCGgtattcattttcacttgttgatggccatataacctatttatataataccggttaggaagttgtacatacttcaaagggtttactatctttttagtcctta...

Basic information

species Glycine max
transcript GLYMA10G26870.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G26870.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G324540_T01 (Zea mays), 5'ss of exon 15
ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAATTGAAGAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCGgtattcattttcacttgttgatggccatataa---cctatttatataataccggttaggaagttgtacatacttcaaagggtttactatctttttagtcctta
||||||||||||||||||||||||||||||||||| |||||||| |  || || |||| |||  |||| |||||||  || || || || |   | ||||   |  ||  |   |  |  |  | | |    |  ||   |  | |  |   |    | || ||  ||     |  || | | |   | | |        
ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAATTTTAGGACTTTCTCTCCCTATGATTTGGACACGCCAACCAATACTGgtaagtaacttggcc-atgaacagttagaaaggtgcacatgcttgcatttgcatatgtataattatagctatcgggagagggtcattcgatgtatgaaatg--

upper sequence: GLYMA10G26870.1 (Glycine max), 5'ss of exon 15
lower sequence: AC205703.4_FGT004 (Zea mays), 5'ss of exon 5
ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAATTGAAGAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCGgtattcattttcacttgttgatggccata-taacctat-ttatataataccggt-taggaagttgtacatacttcaaagggtttactatctttttagtcctta
||| ||||||||||||||||||||||||||||||| |||||||| |  || || |||| |||  |||| |||||||  || || || || |   | ||||   |  ||  |   |  |  |  | | |     |    |   ||||| | | |    | || ||  ||     |  || | | |   | | |        
ACTACTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAATTTTAGGACTTTCTCTCCCTATGATTTGGACACGCCAACCAATACTGgtaagtaacttggcc-atgaacagttagaatggtgcacgccaaccaatactgatatgtataattatagctatcgggagagggtcattcgatgtatgaaatg--

upper sequence: GLYMA10G26870.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G037698_T02 (Zea mays), 5'ss of exon 15
ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAATTGAAGAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCGgtattcattttcacttgttgatggccatataacctatttatataataccggttaggaagttgtacatacttcaaagggtttactatctttttagtcctta----
|||||||||||||||||||| |||||||||||||| || ||||| |  || || ||||  ||  |||| ||||||||||| || || || |   | ||||   |  ||  ||   |||   |||   |     |  | ||  |  |   |    || |  |  ||     |  || | | |   ||| |     | |    
ACTGCTGCTCATGATGGTGTCAAGCTTTGGGATCTTCGGAAATTAAGAAATTTTAGGACCTTCTCTCCCTATGATTCAGATACGCCAACAAATACTGgtaagtaacttggctg--tgaaaaccaagaa--tggtgcacatgcttgcatatgcatagctagagctaacgggagagggtcatttgatttatgaaattcactat

upper sequence: GLYMA10G26870.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv05s0049g01840.t01 (Vitis vinifera), 5'ss of exon 15
ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAATTGAAGAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCGgtattcatt---ttcacttgttgatggccatataacctatttatataataccggttaggaagttgtacat--acttcaaagggtttactatctttttagtcctta
||||| |||||||||||||||||||| ||||||||||| ||||||| ||| ||| |||  ||| | |||||||||||| | ||| | || | ||| |||||  |||   || | |    || |    || | | ||   | | | ||     ||  ||  |    ||  |     ||  |||||  | ||  || |   |  
ACTGCAGCTCATGATGGTGTTAAGCTGTGGGATCTACGAAAATTGAGGAATTTCCGGACCTTTACACCATATGATTCAAATACAGCAACAAACTCTGgtatgtattcagtttattcaccga-gtttttaaaccttacgaagagattaagctgtattaaacttctgattaagggggaaaagttta--aactagttggaaat--

upper sequence: GLYMA10G26870.1 (Glycine max), 5'ss of exon 15
lower sequence: PP1S14_250V6.2 (Physcomitrella patens), 5'ss of exon 15
ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAATTGAAGAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCGgtattcattttcacttgttgatggccatataacctat-ttatataataccggttaggaagttgtacatacttcaa-agggtttactatctttttagtcctta
|||||||| || ||||| |||||||| |||||||| || || |||||||||||| |    ||||| || || ||     | ||||  || |   | ||| | |        ||  | ||      ||||   || ||   || |  |  || |   |       | | |||| |  ||  | |  ||| | | || |  
ACTGCTGCACAAGATGGAGTTAAGCTGTGGGATCTGCGCAAGTTGAAGAACTTCCGTTCCTTTGCACCTTACGACAGTAACACACTAACAAATACAGgtctgccaggcttttttcttataaatgaataaatcatattggctactttccttttgtgtgaatcttttgcatcaatattgtgcatttgcttgtgactctt--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024208|gb|CX710949.1|CX710949
EST:     GAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCG                         TGGAGTTTGATCACAGTGGATCCTACCTAGCAGTTGCTGGCTCTGATATAA
genomic: GAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCGgtattcattt ... tatcttgcagTGGAGTTTGATCACAGTGGATCCTACCTAGCAGTTGCTGGCTCTGATATAA
EST: gi|254349410|gb|GR860208.1|GR860208
EST:     GAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCG                         TGGAGTTTGATCACAGTGGATCCTACCTAGCAGTTGCTGGCTCTGATATAA
genomic: GAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCGgtattcattt ... tatcttgcagTGGAGTTTGATCACAGTGGATCCTACCTAGCAGTTGCTGGCTCTGATATAA
EST: gi|254349409|gb|GR860207.1|GR860207
EST:     GAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCG                         TGGAGTTTGATCACAGTGGATCCTACCTAGCAGTTGCTGGCTCTGATATAA
genomic: GAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCGgtattcattt ... tatcttgcagTGGAGTTTGATCACAGTGGATCCTACCTAGCAGTTGCTGGCTCTGATATAA
EST: gi|208042405|gb|GD840887.1|GD840887
EST:     GAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCG                         TGGAGTTTGATCACAGTGGATCCTACCTAGCAGTTGCTGGCTCTGATATAA
genomic: GAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCGgtattcattt ... tatcttgcagTGGAGTTTGATCACAGTGGATCCTACCTAGCAGTTGCTGGCTCTGATATAA
EST: gi|51341959|gb|CO983276.1|CO983276
EST:     GAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCG                         TGGAGTTTGATCACAGTGGATCCTACCTAGCAGTTGCTGGCTCTGATATAA
genomic: GAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCGgtattcattt ... tatcttgcagTGGAGTTTGATCACAGTGGATCCTACCTAGCAGTTGCTGGCTCTGATATAA