Sequence
atgc intronic sequence ATGC exonic sequenceTTGCTGCTGCTCTTGCATACCGCAACCCATTTGTCTTACCCATAAACAGAAAAGAGGAAGCCGATGCAGCAAAACAATCTTTTGCAGGTGATTCTTGCAGgttagttgttgatattcaagaaaatgttccttccctggtggtgttcattcaaattttactgcattgatcaagctagtgctcaattataaatatattttcatttcag
Basic information
species | Glycine max |
transcript | GLYMA10G10180.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G10180.1 (Glycine max), 5'ss of exon 15
lower sequence: AT2G35920.1 (Arabidopsis thaliana), 5'ss of exon 13
TTGCTGCTGCTCTTGCATACCGCAACCCATTTGTCTTACCCATAAACAGAAAAGAGGAAGCCGATGCAGCAAAACAATCTTTTGCAGGTGATTCTTGCAGgttagttgttgatattcaagaaaatgttccttccctggtggtgttcattcaaattttactgcattgatcaagctagtgctcaattataaatatattttcatttcag
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TCGCTGCTGCTCTGGCGTATCGTAGCCCATTTGTCTTACCATTAAATAGGAAAGAGGAAGCTGATGAAGCCAAACGATATTTTGCTGGTGATTCCTGCAGgtatgacatctataggcaa-attacgtttatttcacaccgtcagtcaaccaggtcactgtgttctgtttcttacggaaaagatttg-gcatatatgtgttgtgcag
upper sequence: GLYMA10G10180.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 13
TTGCTGCTGCTCTTGCATACCGCAACCCATTTGTCTTACCCATAAACAGAAAAGAGGAAGCCGATGCAGCAAAACAATCTTTTGCAGGTGATTCTTGCAGgtt-agttgttgatattcaagaaaatgttccttccctgg-------tggtgttcattcaaattttactgcattgatcaagctagtgctcaattataaatatattttcatttcag
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TTGCAGCTGCTCTTGCACATCGTGACCCATTTGTCCTTCCAATAAATAGGAAAGAAGAAGCTAATGCTGCAAAAAGATCCTTTGCTGGCGATTCTTGCAGgttcagttatttaacaaagtcatgctgttctctgctttgagaattgtagaatcttttcaaaatttacattgattttgttgataaggtgaaattttccacac-cttttaatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15203535|gb|BI426303.1|BI426303EST: AAAGAGGAAGCCGATGCAGCAAAACAATCTTTTGCAGGTGATTCTTGCAG TGATCACTTAGCCCTTCTCAAAGCTTTTGAAGGATGGAAGGAGGCAAAGCG
genomic: AAAGAGGAAGCCGATGCAGCAAAACAATCTTTTGCAGGTGATTCTTGCAGgttagttgtt ... ttcatttcagTGATCACTTAGCCCTTCTCAAAGCTTTTGAAGGATGGAAGGAGGCAAAGCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGCTGCTGCTCTTGCATACCGCAACCCATTTGTCTTACCCATAAACAGAAAAGAGGAAGCCGATGCAGCAAAACAATCTTTTGCAGGTGATTCTTGCAGgttagttgttgatattcaagaaaatgttccttccctggtggtgttcattcaaattttactgcattgatcaagctagtgctcaattataaatatattttcatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA