Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCTTATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGgtaggtgctgaatatcaaaattcacaaatttattaattgtattgttttatttgtttgtgacatttttttttaattgcggttatggttgtgttgctatttc...

Basic information

species Glycine max
transcript GLYMA09G39770.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os04g58620.1 (Oryza sativa), 5'ss of exon 12
TTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCTTATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGgtaggtgctgaatatcaaaattcacaaatttattaattgtattgttttatttgtttgtgacatttttttttaattgcggttatggttgtgttgctatttc-----
|||||||||| || | || |||||||| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| || || || ||||||||||||||| |  ||    || | |||   ||  ||| ||   | | |      ||  | |  |   | |||  || |||     |   | |  | |  | || |      
TTTGGCTGGTCTATTGCTAGCAGAAACAGAATTCTCCTTACAGGTTGAGTCGGATATTGCTCCTTACCGTGGTCTTCTGTTAGGTCTTTTCTTTATGACGgtaaggactctgaat-ataatcatcattttttttgtctatgtca----atgagctgataggagtttgcttcaatgtttatatggataatataacaatgtacatat

upper sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G058948_T01 (Zea mays), 5'ss of exon 11
TTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCTTATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGgtaggtgctgaatatcaaaattcac-aaatttattaattgtattgttttatttgtttgtgacatttttttttaattgcggttatggttgtgttgctatttc--------------------------------------------------------------------------------------------------------
|||||||||| |  |||| |||||||| || || |||||||||||||| || ||||| |||||||||||||| ||||| || || || ||||||||||||||  || | | | ||  || | ||  |||||| ||||    | ||    || || |  |     | | |||  | ||    ||   ||||      ||                                                                                                           
TTTGGCTGGTCTGTTACTAGCAGAAACAGAGTTCTCCTTACAGGTTGAGTCAGATATAGCTCCTTATCGTGGTCTTCTGTTAGGACTTTTCTTTATGACGgtgagtaccgtaaatataattgcattaaatttcttaa--acactg----atatgctgctagtgctatgtttcgagtgttcctaactttgtaccatcatcatgggcatcaaacaaattaagttatcacagaccttgctactctaatagttactacatttaacttcatattaaacataattaaccattttttggctgggaactgaag

upper sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G093643_T01 (Zea mays), 5'ss of exon 12
TTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCTTATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGgtaggtgctgaatatcaaaattcacaaatttattaattgtattgt-tttatttgtttgtgacatttttttttaattgcggttatggttgtgttgctatttc
||| |||||| |  |||| |||||||| || || || || |||||||| || ||||| ||||| |||||||| ||||| || || || ||||||||||||||  || |||   ||  || | ||  ||   |||| || | |     | || |  |  | |  || | ||| || ||    ||   || |      ||   
TTTAGCTGGTCTGTTACTAGCAGAAACAGAGTTCTCATTGCAGGTTGAGTCAGATATAGCTCCCTATCGTGGTCTTCTGTTAGGACTTTTCTTTATGACGgtgagtactgtgaatataattgcattaaga-attatttctttaacactgatatactgctaatgttatgtttcaagtgttcctaaccttataccatcatcat

upper sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 15
lower sequence: AT4G00630.2 (Arabidopsis thaliana), 5'ss of exon 11
TTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCTTATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGgtaggtgctgaa-----tatcaaaattcacaaatttattaattgtattgttttatttgtttgtgacatttttttttaattgcggttatggttgtgttgctatttc
|||||||||| ||||||| ||||| |||||||||||||| || |||||||| ||||| ||||| || ||||| ||||| ||||| |||||||| |||||||||  |  ||||     | |  ||| |  |  ||  || | || || ||||||  |||   | ||   |      | |||     || || | |   |  || | 
TTTGGCTGGTCTACTACTTGCAGAGACTGAATTTTCCTTGCAAGTTGAATCAGATATCGCTCCATACCGTGGTCTTCTGTTGGGACTCTTCTTCATGACGgtaatttgtgaactaggtcttgaaaatagctgatcgataagtt-tactgttttccttg---gagatggtcagaagttattataaata-ggatattaaggaatata

upper sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 15
lower sequence: AT1G01790.1 (Arabidopsis thaliana), 5'ss of exon 12
TTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCTTATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGgtag---gtgctgaatatcaaaattcacaa--atttattaatt---------gtattgttttatttgtttgtgacatttttttttaattgcggt----tatggttgtgttgctatttc------------------------------------------
|||||||||| |||| || ||||| || |||||||| || || || ||||| ||||||||||| |||||||| ||||| ||||| |||||||| |||||||||    | | |   ||  ||  ||  | |   ||||| | ||          |   |   |||   |     |       ||||| ||| | |    || | |  || |  | ||                                            
TTTGGCTGGTCTACTCCTTGCAGAGACAGAATTTTCGTTGCAAGTAGAATCAGATATTGCTCCATATCGTGGTCTTCTGTTGGGACTCTTCTTCATGACGgtaatatgagtttcctaataactttttccatagtttatcatttctgaaaagaatgaggaactatagatggaaaaggaaaccttttacttgtgttctagtaagatcctgatattgttgtcaactgtaagcaaactaacaaaaagagttccattgatttcag

upper sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 10
TTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCTTATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGgtaggtgctgaatatcaaaattcacaaatttattaattgtattgttttatttgtttgtgacatttttttttaattgcggttatggttgtgttgctatttc-------
|||||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | ||||| |||||||| |||||||||||| ||  |       |||  |||       |   | |||  |||||    |  | |||| |     |  || |  ||    |   ||| |   ||        
TTTGGCTGGTTTGCTTCTTGCAGAAACTGAATTTTCCTTACAGGTTGAATCAGATATTGCTCCATATCGTGGCCTTTTATTGGGTCTCTTCTTCATGACGgtaggttcttcaccatgccatttccaag------agaggcatttatttatccaatcctaacatataaacctcgtttctattcct-tgaagttacctgtttggagaga

upper sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 15
lower sequence: PP1S31_202V6.1 (Physcomitrella patens), 5'ss of exon 13
TTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCTTATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGgtaggt--gctgaatatcaaaattcacaaatttattaattgtattgttttattt---gtttgtgacatttttttttaattgcggttatggttgtgt-tgctatttc-------------------------------------------------
  | || || ||||| |||||||||||||||||| | ||||| || || || || ||||| |||||| | ||| |  | ||||| |||||||||||||||||  ||  ||| |   |  |  |  |   | |     | || |  |||| ||||   |||| |    |||| || ||| | |   ||||||      ||| |||                                                   
CCTTGCGGGCTTACTCCTGGCAGAAACTGAATTTGCATTACAAGTGGAGTCGGACATTGCGCCTTATAGAGGCTTGTTATTGGGTCTCTTCTTTATGACGgttagtatgctcatggtgcacgtagaggtagtagaggaatggagagtttcatttcctgtttcttgtcttttcttctaagtaca--tatggtaacacgtgcaattaaacgatcggccggattcatcttatttcaagtatctaacccgtatctgcag

upper sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 15
lower sequence: EFJ10973 (Selaginella moellendorffii), 5'ss of exon 9
TTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCTTATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGgtaggtgctgaatatcaaaattcacaaatttattaattgtattgttttatttgtttgtgacatttttttttaattgcggttatggttgtgttgctatttc
| | |||||  | ||  || ||||||| || ||  |  |||| |||||||| |||||||| || ||||| || |||||| |||| || ||||||||||| ||| ||| |       || |   | |  | |    |    ||| | |    |        ||                                      
TCTTGCTGGACTCCTTTTGTCAGAAACCGAGTTCGCTCTACAAGTTGAATCCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACAgtaagtggtttcctctaagaacaata--tcttccgagctcattatctggcgtaacacctgcag-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996864|gb|BM086236.1|BM086236
EST:     CTGATATTGCTCCTTATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACG                         GTTGGAATGTCAATTGATCCAAAACTTCTTGTTTCAAACTTCCCAGTCATT
genomic: CTGATATTGCTCCTTATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGgtaggtgctg ... gacttttcagGTTGGAATGTCAATTGATCCAAAACTTCTTGTTTCAAACTTCCCAGTCATT