Sequence
atgc intronic sequence ATGC exonic sequenceACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAGgtatcagaaccatatgcatgtatctataactcttcttcattgttacacttttcctccaacattcttttacgtaattttgaatttttatcattcag
Basic information
species | Glycine max |
transcript | GLYMA09G38740.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G38740.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os01g60440.1 (Oryza sativa), 5'ss of exon 15
ACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAGgtatcagaaccatatgcatgtat-ctataactcttctt-cattgttacacttttcctccaacattcttttacgtaat-tttgaatttttatcattcag
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ACTAGGAAAAGGGTATTGATCAACGCATTTACTGTCCGTGCATTACGTGATACCTTCCCCCCTGCTCGAGCAGCTGgta-cattgccctgtagagttgttctgttttactacttacaatgctatatcgtactaattattgacaagtaagtattgctttaccatttgtctggcag
upper sequence: GLYMA09G38740.1 (Glycine max), 5'ss of exon 15
lower sequence: AC218972.3_FGT001 (Zea mays), 5'ss of exon 15
ACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAGgtat-cagaaccatatgcatgtatctataactcttcttcattgtta--cacttttcctccaacattcttttacgtaattttgaatttttatcattcag--------------------
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ACAAGGAAGAGAGTACTGATCAATGCATTCACAGTTCGTGCATTACGTGATACCTTCCCTCCGGCCAGAGCAGCTGgtacatacctttgcaaacgtgctgttttagtaccgttagatctacgagtatttttcagtgagcaagtgtgaatgctttgtaccatgcctaacaattatttactcttgcttcattgcag
upper sequence: GLYMA09G38740.1 (Glycine max), 5'ss of exon 15
lower sequence: AT2G40730.1 (Arabidopsis thaliana), 5'ss of exon 15
ACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAGgtatcagaaccatatgcatgtatctataactcttcttcattgttacactt---ttcctccaacattcttttacgtaattttga-atttttatcattcag---------------------------------------
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ACAAGGAAAAGAGTTTTGATTAATGCTTTTACAGTGCGTGCATTGCGTGATACATTTCCACCTGCTCGAGGTGCAGgtatgtgaatataacaggatcatagatattacatattgtgtgggatgtttaggttctatgaacatcatttcg-atattcctgttgttatcctctttccaggtgtcatcttatatctcactggattttactcttcgcag
upper sequence: GLYMA09G38740.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv13s0067g03110.t01 (Vitis vinifera), 5'ss of exon 15
ACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAGgtatcagaaccatatgcatgtatctataactcttcttcattgttacacttttcctccaacattctttt-acgtaattttgaa---tttttatcattcag---
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ACTAGGAAAAGAGTTTTGATAAATGCATTTACAGTTCGTGCATTGCGTGATACTTTCTCTCCTGCCCGAGGAGCAGgta--attatgaacttgatctgtttttcaactttgtttacttctacaaatacctgctggtgttctttccactttttgttgaaaattcttttgcactttcatgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|12490066|gb|BG043587.1|BG043587EST: ATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAG GCATTATGGCTTTATGCGCCACCAGTTCCTACTATGACATCACTGAAGTTG
genomic: ATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAGgtatcagaac ... tatcattcagGCATTATGGCTTTATGCGCCACCAGTTCCTACTATGACATCACTGAAGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAGgtatcagaaccatatgcatgtatctataactcttcttcattgttacacttttcctccaacattcttttacgtaattttgaatttttatcattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG