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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTATATATGTGCTGGAAATATTGATAAAACTGTTGAAATTTGGTCAAGGAGCCTGTCAAATGAGCACGAGGGAAAATCTTATGTTGACCTTCTTCAGgtaagattgaccctcttgttgtagctgttataaaattctcgcttaccagtattgctgctagaaaattgacaagattatctattgttag

Basic information

species Glycine max
transcript GLYMA09G36050.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G36050.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G152963_T01 (Zea mays), 5'ss of exon 15
GTGTTATATATGTGCTGGAAATATTGATAAAACTGTTGAAATTTGGTCAAGGAGCCTGTCAAATGAGCACGAGGGAAAATCTTATGTTGACCTTCTTCAGgtaagattgaccctcttgttgtagctgttataaaatt-ctcgcttaccagtattgctgctagaaaattgacaagattatctattgttag
 |||||||| ||||||||||||||||||||| |||||||||| |||||  | | | ||  |  |||  | |  || ||   ||||||||| ||||| |||||| ||||       ||||  ||| |   ||   ||  |  |  | |||| |  | | |||    | |     |   ||  |       
CTGTTATATTTGTGCTGGAAATATTGATAAAGCTGTTGAAATATGGTCCCGCACCTTGAAATCTGAAGATGGTGGGAAGATTTATGTTGATCTTCTCCAGgtacgatt-------ttgtaatagttcacattctatagcatggctcccag-acagttcctaattgactagtgtggaaatgcag------

upper sequence: GLYMA09G36050.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G035985_T03 (Zea mays), 5'ss of exon 15
GTGTTATATATGTGCTGGAAATATTGATAAAACTGTTGAAATTTGGTCAAGGAGCCTGTCAAATGAGCACGAGGGAAAATCTTATGTTGACCTTCTTCAGgtaagattg-accctcttgttgtagctgttataaaattctcgcttaccagtattgctgctagaaaattgacaagattatctattgttag
 |||||||| ||||||||||||||||| ||| |||||||||| |||||  | | | ||  |  |||  | |  || ||  |||||||||| ||||| |||||| | ||| |   |     || |     ||||  |||    |  | || |     | |||    |||   | |   ||  |       
CTGTTATATTTGTGCTGGAAATATTGACAAAGCTGTTGAAATATGGTCCCGCACCTTGAAATCTGAAGATGGTGGGAAGACTTATGTTGATCTTCTCCAGgtatggttgtataataagagtgcacaatctatagcattgctcccgaacaat-----tcctaattgattagtatgcaaatgcag------

upper sequence: GLYMA09G36050.1 (Glycine max), 5'ss of exon 15
lower sequence: AT3G63460.1 (Arabidopsis thaliana), 5'ss of exon 15
GTGTTATATATGTGCTGGAAATATTGATAAAACTGTTGAAATTTGGTCAAGGAGCCTGTCAAATGAGCACGAGGGAAAATCTTATGTTGACCTTCTTCAGgtaagattgaccctcttgttgtagctgttataaaattctcgcttaccagtattgctgctagaaaattgacaagattatctattgttag
 || || || || || || ||| |||| | ||| || ||||||||||| ||||||||  |||||||||  || |||| |||||||| ||| |||||||| ||     ||   | |||  | |   |     | || | | |||     |  |  | |||   |  ||       ||||||  |  |||
CTGCTACATTTGCGCAGGCAATGTTGACAGAACAGTAGAAATTTGGTCGAGGAGCCTTGCAAATGAGCGGGATGGAAGATCTTATGCTGAGCTTCTTCAAgtg----tgtatcactttctatgtttcgcgcataaattttgct---gggcttctccgctcatatttttctgcccttatcttataatag

upper sequence: GLYMA09G36050.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv13s0158g00140.t01 (Vitis vinifera), 5'ss of exon 15
GTGTTATATATGTGCTGGAAATATTGATAAAACTGTTGAAATTTGGTCAAGGAGCCTGTCAAATGAGCACGAGGGAAAATCTTATGTTGACCTTCTTCAGgtaagattgaccctcttgttgtagctgttataaaattctcgcttaccagtattgctgctagaaaattgacaagattatctatt--gttag
 |||||||||||||||||||||||||||||||| || || ||||||||  |||| ||| |   |||||| || ||||| || ||||||||  |||||||||||||  ||   || |||           | |   |  | ||  |    | |    |||||||| |    |   || |   ||   ||||
TTGTTATATATGTGCTGGAAATATTGATAAAACGGTGGAGATTTGGTCCCGGAGTCTGACTGCTGAGCATGAAGGAAAGTCCTATGTTGATGTTCTTCAGgtaagtatgctgcttttg-----------aaagtttgtttgcacatttat-tcaaagctagaaattcattactcttgttcgtttgattag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207754477|gb|GD730262.1|GD730262
EST:     GGAGCCTGTCAAATGAGCACGAGGGAAAATCTTATGTTGACCTTCTTCAG                         GATTTAATGGAAAAGACTATTGTTCTTGCCCTTGGCAACTGGGCAGAAGCA
genomic: GGAGCCTGTCAAATGAGCACGAGGGAAAATCTTATGTTGACCTTCTTCAGgtaagattga ... ctattgttagGATTTAATGGAAAAGACTATTGTTCTTGCC-TTGGCAACTGGGCAGAAGCA
EST: gi|213598047|gb|DB972235.1|DB972235
EST:     GGAGCCTGTCAAATGAGCACGAGGGAAAATCTTATGTTGACCTTCTTCAG                         GATTTAATGGAAAAGACTATTGTTCTTGCCTTGGCAACTGGGCAGAAGCAG
genomic: GGAGCCTGTCAAATGAGCACGAGGGAAAATCTTATGTTGACCTTCTTCAGgtaagattga ... ctattgttagGATTTAATGGAAAAGACTATTGTTCTTGCCTTGGCAACTGGGCAGAAGCAG