1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TGGTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACTgtaagttgccagaatcagaagcttttttttttcaatcatatcatgttctttttcattgttccagtggtgcattttgggacaaattttgtttaaattttgaaaaatgatttttttttaccttaagctgaagctgatataagatattgctatgtcattatttaacag
species | Glycine max |
transcript | GLYMA09G28100.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACT GGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTACEST: gi|18719876|gb|BM523226.1|BM523226
genomic: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACTgtaagttgcc ... tatttaacagGGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTAC
EST: ACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACT GGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTACEST: gi|254322344|gb|GR837758.1|GR837758
genomic: ACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACTgtaagttgcc ... tatttaacagGGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTAC
EST: TGAAACTGAGGATACCTTCATTGCTGACCTCCTCAGTTGGATTAGCAACT GGTCAGATCA-GACTGGAGCTCCEST: gi|7234456|gb|AW569793.1|AW569793
genomic: TGAAACTGAGGATACCTTCATTGCTGACCTC-TCAGTTGGATTAGCAACTgtaagttgcc ... tatttaacagGGTCAGATCAAGACTGGAGCTCC
EST: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACT GGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTACEST: gi|16348781|gb|BI974376.1|BI974376
genomic: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACTgtaagttgcc ... tatttaacagGGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTAC
EST: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACT GGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTACEST: gi|209704370|gb|BW678366.1|BW678366
genomic: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACTgtaagttgcc ... tatttaacagGGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTAC
EST: GTGAAACTGAGGATACCTTCATCGCTGACCTCTCAGTTGGATTAGCAACT GGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTACEST: gi|209701949|gb|BW683178.1|BW683178
genomic: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACTgtaagttgcc ... tatttaacagGGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTAC
EST: GTGAAACTGAGGATACCTTCATCGCTGACCTCTCAGTTGGATTAGCAACT GGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTACEST: gi|209709209|gb|BW657178.1|BW657178
genomic: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACTgtaagttgcc ... tatttaacagGGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTAC
EST: GTGAAACTGAGGATACCTTCATCGCTGACCTCTCAGTTGGATTAGCAACT GGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTACEST: gi|254322345|gb|GR837759.1|GR837759
genomic: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACTgtaagttgcc ... tatttaacagGGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTAC
EST: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACT GGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTACEST: gi|209703772|gb|BW670708.1|BW670708
genomic: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACTgtaagttgcc ... tatttaacagGGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTAC
EST: GTGAAACTGAGGATACCTTCATCGCTGACCTCTCAGTTGGATTAGCAACT GGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTACEST: gi|254349416|gb|GR860413.1|GR860413
genomic: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACTgtaagttgcc ... tatttaacagGGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTAC
EST: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACT GGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTACEST: gi|21479746|gb|BQ576429.1|BQ576429
genomic: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACTgtaagttgcc ... tatttaacagGGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTAC
EST: GTGAAACTGAGGATACCTTCATCGCTGACCTCTCAGTTGGATTAGCAACT GGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTACEST: gi|254321288|gb|GR824605.1|GR824605
genomic: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACTgtaagttgcc ... tatttaacagGGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTAC
EST: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACT GGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTACEST: gi|9204155|gb|BE330379.1|BE330379
genomic: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACTgtaagttgcc ... tatttaacagGGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTAC
EST: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACT GGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTACEST: gi|254346398|gb|GR856120.1|GR856120
genomic: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACTgtaagttgcc ... tatttaacagGGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTAC
EST: AGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACT GGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTACEST: gi|254320852|gb|GR827301.1|GR827301
genomic: AGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACTgtaagttgcc ... tatttaacagGGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTAC
EST: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACT GGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTACEST: gi|207803882|gb|GD773611.1|GD773611
genomic: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACTgtaagttgcc ... tatttaacagGGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTAC
EST: GACCTCTCAGTTGGATTAGCAACT GGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTACEST: gi|254326168|gb|GR840760.1|GR840760
genomic: GACCTCTCAGTTGGATTAGCAACTgtaagttgcc ... tatttaacagGGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTAC
EST: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACT GGTCAGATCAAGACTGGAGCTCCCTGCCGATTTGAAAGGCTTGCCAAGTACEST: gi|254317750|gb|GR826734.1|GR826734
genomic: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACTgtaagttgcc ... tatttaacagGGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTAC
EST: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACT GGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTACEST: gi|254319291|gb|GR828911.1|GR828911
genomic: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACTgtaagttgcc ... tatttaacagGGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTAC
EST: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACT GGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTAC
genomic: GTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACTgtaagttgcc ... tatttaacagGGTCAGATCAAGACTGGAGCTCCCTGCCGATCTGAAAGGCTTGCCAAGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGAAACTGAGGATACCTTCATTGCTGACCTCTCAGTTGGATTAGCAACTgtaagttgccagaatcagaagcttttttttttcaatcatatcatgttctttttcattgttccagtggtgcattttgggacaaattttgtttaaattttgaaaaatgatttttttttaccttaagctgaagctgatataagatattgctatgtcattatttaacag
- - - - - GAGGAT