1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GGGCACCCTTCAAAAAGTTTGCCTCCTTGCGTGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAGgtattttatatatagactattatttcacctatgtttccgctgccttcactgaagccttgaactggagtcattggagttatttgcactatgatctaagtttgttgatcaagataatgtttttcgttgtgtag
species | Glycine max |
transcript | GLYMA09G01050.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TGCCTCCTTGCGTGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAG GTCCAATTCAATTCTCTGGCCCAGGATCTGAAGTAATTAATCACACTCTACEST: gi|15813400|gb|BI785675.1|BI785675
genomic: TGCCTCCTTGCGTGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAGgtattttata ... cgttgtgtagGTCCAATTCAATTCTCTGGCCCAGGATCTGAAGTAATTAATCACACTCTAC
EST: TGCCTCCTTGCGTGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAG GTCCAATTCAATTCTCTTTCCCAGGATCTGAAGTAATTAATCACACTCTACEST: gi|7284788|gb|AW597213.1|AW597213
genomic: TGCCTCCTTGCGTGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAGgtattttata ... cgttgtgtagGTCCAATTCAATTCTCTGGCCCAGGATCTGAAGTAATTAATCACACTCTAC
EST: TGCCTCCTTGCGTGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAG GTCCAATTCAATTCTCTGGCCCAGGATCTGAAGTAATTAATCACACTCTACEST: gi|4313349|gb|AI460468.1|AI460468
genomic: TGCCTCCTTGCGTGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAGgtattttata ... cgttgtgtagGTCCAATTCAATTCTCTGGCCCAGGATCTGAAGTAATTAATCACACTCTAC
EST: TGCCTCCTTGCGTGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAG GTCCAATTCAATTCTCT
genomic: TGCCTCCTTGCGTGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAGgtattttata ... cgttgtgtagGTCCAATTCAATTCTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCACCCTTCAAAAAGTTTGCCTCCTTGCGTGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAGgtattttatatatagactattatttcacctatgtttccgctgccttcactgaagccttgaactggagtcattggagttatttgcactatgatctaagtttgttgatcaagataatgtttttcgttgtgtag
- - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - TGAAGA