1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GCAATTTTGGGGGGAACTATTCAAGTCCCAACTCTTACTGGAGATGTTGTACTTAAGgttaggattatattgaaagacataatatttcttatggcactttcagtaactggggaagtttgaatgatgagtcttgtttggcag
species | Glycine max |
transcript | GLYMA09G00580.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TGGGGGGAACTATTCAAGTCCCAACTCTTACTGGAGATGT-GTACTTAAG GT-CGCCCAG-CACCCAACCTGGTCAGAAAGTGEST: gi|207747473|gb|GD721648.1|GD721648
genomic: TGGGGGGAACTATTCAAGTCCCAACTCTTACTGGAGATGTTGTACTTAAGgttaggatta ... tgtttggcagGTTCGCCCAGGCACCCAACCTGGTCAGAAAGTG
EST: GGGGGGAACTATTCAAGTCCCAACTCTTACTGGAGATGTTGTACTTAAG GTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAGEST: gi|208295200|gb|GE095201.1|GE095201
genomic: GGGGGGAACTATTCAAGTCCCAACTCTTACTGGAGATGTTGTACTTAAGgttaggatta ... tgtttggcagGTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAG
EST: GGGGGGAACTATTCAAGTCCCAACTCTTACTGGAGATGTTGTACTTAAG GTTCG-CCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAGEST: gi|207815787|gb|GD786992.1|GD786992
genomic: GGGGGGAACTATTCAAGTCCCAACTCTTACTGGAGATGTTGTACTTAAGgttaggatta ... tgtttggcagGTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAG
EST: TCCCAACTCTTACTGGAGATGTTGTACTTAAG GTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAGEST: gi|193723143|gb|FK660085.1|FK660085
genomic: TCCCAACTCTTACTGGAGATGTTGTACTTAAGgttaggatta ... tgtttggcagGTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAG
EST: AACTATTCAAGTCCCAACTCTTACTGGAGATGTTGTACTTAAG GTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAGEST: gi|193731483|gb|FK663629.1|FK663629
genomic: AACTATTCAAGTCCCAACTCTTACTGGAGATGTTGTACTTAAGgttaggatta ... tgtttggcagGTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAG
EST: AACTATTCAAGTCCCTAACTCTTTACTGGAGATGTTGTACTTAAG GTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAGEST: gi|208295251|gb|GE095224.1|GE095224
genomic: AACTATTCAAGTCCC-AACTC-TTACTGGAGATGTTGTACTTAAGgttaggatta ... tgtttggcagGTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAG
EST: GGGGGGAACTATTCAAG-CCCAACTCTTACTGGAGATGTTGTACTTAAG GTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAG
genomic: GGGGGGAACTATTCAAGTCCCAACTCTTACTGGAGATGTTGTACTTAAGgttaggatta ... tgtttggcagGTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAATTTTGGGGGGAACTATTCAAGTCCCAACTCTTACTGGAGATGTTGTACTTAAGgttaggattatattgaaagacataatatttcttatggcactttcagtaactggggaagtttgaatgatgagtcttgtttggcag
- - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - GAGATG