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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCCTTGATGTTGAGGAGTATGCAAAACAATTTCCAACCATTGGTTTTGATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgttattctttactcattttctcatttgtttattcttattcattttcgtttgtcccatattggttgacaaggtcatagacaagaggtagttagcc...

Basic information

species Glycine max
transcript GLYMA08G37270.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os03g52840.3 (Oryza sativa), 5'ss of exon 12
CCGCCTTGATGTTGAGGAGTATGCAAAACAATTTCCAACCATTGGTTTTGATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgttattctttactcattttctcatttgtttattcttattcattttcgtttgtcccatattggttgacaaggtcatagacaagaggtagttagcc--------
  ||| |||||| ||||| ||||||||||| || || || ||||| ||||| |||| |||||||||| ||||||| | |||||     | |    |  ||  | |  || | ||  ||  ||    |   |   || || ||   |||  | |  ||    ||||| |||| | ||| | | |    ||  |  | | ||        
--GCCATGATGTGGAGGAATATGCAAAACAGTTCCCCACAATTGGGTTTGAGAAAGAAACCATGAAGTACAAGAACTAAGAAACTTTGAATGG--AACAGCAAGgtattgtcctg-acagataaattggctccatttttttttagcatgct-gcatgcagtatattagttgcctaggccttggctccga--tcatgaaccatgtttac

upper sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G135283_T04 (Zea mays), 5'ss of exon 15
------CCGCCTTGATGTTGAGGAGTATGCAAAACAATTTCCAACCATTGGTTTTGATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgttattctttactcattttctcatttgtttattcttattcattttcgttt-gtcccatattggttgacaaggtcatagacaagaggtagttagcc--------------------------------
       |||| |||||| ||||| | |||||||||||| ||||| ||||| ||||| ||||  ||||||||  ||||||| | | |   | |        |  ||||||||  ||| |||| | |  |||     || |  ||||| ||  |   | | |  ||     |  ||   ||  |  |    ||    | |   |  |                                 
AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATG------ACAAGgtatgctctat-ctttgcacggtttagtcattatgcattctaatatacagtagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcag

upper sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 15
------CCGCCTTGATGTTGAGGAGTATGCAAAACAATTTCCAACCATTGGTTTTGATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgttattctttactcattttctcatttgtttattcttattcattttcgttt-gtcccatattggttgacaaggtcatagacaagaggtagttagcc-----------------------------------
       |||| |||||| ||||| | |||||||||||| ||||| ||||| ||||| ||||  ||||||||  ||||||| | | |   | |        |  ||||||||  ||| |||| | |  |||     || |  ||||| ||  |   | | |  ||     |  ||   ||  |  |    ||    | |   |  |                                    
AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATG------ACAAGgtatgctctat-ctttgcacggtttagtcattatgcattctaatatacagtagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcagaag

upper sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv00s0211g00070.t01 (Vitis vinifera), 5'ss of exon 15
----------------CCGCCTTGATGTTGAGGAGTATGCAAAACAATTTCCAACCATTGGTTTTGATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgttattctttactcattttctcatttgtttattcttattcattttcgtttgtcccatattggtt-gacaaggtcatagacaagaggtagttagcc
                 ||||  || || || ||||||||||| ||||| ||||| ||||| ||||| |||| |||||||||| ||||||| | |   | | |   | |     || |||  | |    || ||      |   | | |||||   |   |  |   |   |     | ||  ||| || |||     |  ||  |           
CTGAGATTGCAAAGCTTCGCCACGAGGTGGAAGAGTATGCAAAGCAATTCCCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt-gccagatatatgct----ttgaccatcagtagtaatggttta---tggattgtaaacagctaaagtagatgagtttgataagacagcaatcacaacc---------

upper sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv00s0211g00080.t01 (Vitis vinifera), 5'ss of exon 4
CCGCCTTGATGTTGAGGAGTATGCAAAACAATTTCCAACCATTGGTTTTGATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgttattctttactcattttctcatttgtttattcttattcattttcgtttgtcccatattggttgacaaggtcatagacaagaggtag-ttagcc---------------
                                            ||||  ||        | || | | || | |   ||   |   | |||          |||||   |      ||||  | |  || ||   || |  |  | |   | |  |    |     ||   ||| |  ||   ||| |  | | || |                 
--------------------------------------------GTTTCTATGTTTGGTTCTTGCAACCCAGGGACAAAgttgaaggactttcttggccacaatgcg--gtctagccctcacctccaaatctgaggatgcaaaagcttcgccatgaggtggaggg-agtatgcaaagcaattcccaacaattggatttgagaaagaaaccatgaag

upper sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 15
----------------CCGCCTTGATGTTGAGGAGTATGCAAAACAATTTCCAACCATTGGTTTTGATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgttattctttactcattttctcatttgtttattcttattcattttcgtttgtcccatattgg-ttgacaaggtcatagacaagaggtagttagcc
                 |||| ||| || |||||||||||||| ||||| ||||| ||||| ||||| |||| |||||||||| ||||||| | |   | | |   | |     || |||  | |    || ||      |   | | |||||   |   |  |   |   |     | ||  | |||| |||     |  ||  |           
CTGAGATTGCAAAGCTTCGCCATGAGGTGGAGGAGTATGCAAAGCAATTCCCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctatt-gccagatatatgct----ttgaccatcagtagtaatggttta---tggattgtaaacagctagagtagatgagcttgataagacagcaatcacaacc---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120496522|gb|EH224689.1|EH224689
EST:     ATAAAGCAACCATGTAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|209715302|gb|BW654189.1|BW654189
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|213600939|gb|DB980362.1|DB980362
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|214009158|gb|DB988551.1|DB988551
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|7326576|gb|AW620374.1|AW620374
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|213606209|gb|DB976454.1|DB976454
EST:     TAAAGCAACCATGAAG-ATCAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: TAAAGCAACCATGAAGCA-CAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|120495450|gb|EH223617.1|EH223617
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|31463753|gb|CD405781.1|CD405781
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|209724909|gb|BW669598.1|BW669598
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|31463613|gb|CD405641.1|CD405641
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCGATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|213604998|gb|DB982304.1|DB982304
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|209716395|gb|BW650768.1|BW650768
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|209710569|gb|BW676521.1|BW676521
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|120532861|gb|EH260994.1|EH260994
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAACGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|7924651|gb|AW830677.1|AW830677
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|214007919|gb|DB986480.1|DB986480
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|120492638|gb|EH220805.1|EH220805
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|31456944|gb|CD398972.1|CD398972
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|6071890|gb|AW101277.1|AW101277
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|22541323|gb|BU091166.1|BU091166
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTT
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTT
EST: gi|213602914|gb|DB974079.1|DB974079
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|31470758|gb|CD412786.1|CD412786
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|209708167|gb|BW673830.1|BW673830
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|11412137|gb|BF424157.1|BF424157
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|120495440|gb|EH223607.1|EH223607
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|209718643|gb|BW662721.1|BW662721
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|214005553|gb|DB989381.1|DB989381
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|209725632|gb|BW663121.1|BW663121
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|15203223|gb|BI425991.1|BI425991
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|209721356|gb|BW654550.1|BW654550
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|209711969|gb|BW679048.1|BW679048
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|7691708|gb|AW759831.1|AW759831
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|209704315|gb|BW683547.1|BW683547
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|10238244|gb|BE807195.1|BE807195
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|31561799|gb|CD487637.1|CD487637
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|31457561|gb|CD399589.1|CD399589
EST:     ATAAAGCAACCATGAAGCACCAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCCATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|214005530|gb|DB989220.1|DB989220
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|31461256|gb|CD403284.1|CD403284
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCTATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|209699628|gb|BW655720.1|BW655720
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|7283472|gb|AW596079.1|AW596079
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|151400775|gb|EV270589.1|EV270589
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|209709692|gb|BW668228.1|BW668228
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|20813386|gb|BQ297864.1|BQ297864
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCCAGCAATTC
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTC
EST: gi|214005303|gb|DB985145.1|DB985145
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|151399265|gb|EV269136.1|EV269136
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|120495356|gb|EH223523.1|EH223523
EST:     ATAAA-CAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|213593505|gb|DB977192.1|DB977192
EST:     ATAAAGCAACAATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|12690400|gb|BG156736.1|BG156736
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAGAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCA
EST: gi|151406194|gb|EV276009.1|EV276009
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|120495586|gb|EH223753.1|EH223753
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|20812881|gb|BQ297359.1|BQ297359
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|31307474|gb|CD392677.1|CD392677
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|11688276|gb|BF595952.1|BF595952
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|209728366|gb|BW660004.1|BW660004
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|209719838|gb|BW674990.1|BW674990
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|209715020|gb|BW650871.1|BW650871
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|209699198|gb|BW656187.1|BW656187
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|209716860|gb|BW682262.1|BW682262
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
EST: gi|209700490|gb|BW660884.1|BW660884
EST:     ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAG                         GTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA
genomic: ATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgtta ... aatttgacagGTCATCCCATGGTCTTACTGGCAAGCAATTCAACAAGATCAGTTTTCCTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGCCTTGATGTTGAGGAGTATGCAAAACAATTTCCAACCATTGGTTTTGATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgttattctttactcattttctcatttgtttattcttattcattttcgtttgtcccatattggttgacaaggtcatagacaagaggtagttagcc

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA