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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGCTCCTGAACCTGATTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTGCACATATCAAAGgtagaccatacgagtccactttgttgatccttgtttatgttatagttatttgtttagttttgaatataatttgtaaggatgcttgacaatgagcatggcg...

Basic information

species Glycine max
transcript GLYMA08G28890.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os08g42530.1 (Oryza sativa), 5'ss of exon 15
TGGAGCTCCTGAACCTGATTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTGCACATATCAAAGgtagaccatacgagtccactttgttgatccttgtttatgttatagttatttgtttagttttgaatataatttgtaaggatgcttgacaat-gagcatggcg
|||  ||   |||||||||||||||||| |||| |||||||  ||| | ||||| ||||| ||||| |||||  | || || || ||||| ||||||||||||    | |  | |  |  | ||  || ||  | | |  |   || |  |     |      |  |  |  ||  | ||   | | | | |||  | |  
TGGTTCTATGGAACCTGATTGGGCATCATTAAACCTTGGTGCACTTCTGTGCATAGAGTGCTCTGGGGTACACAGAAATCTCGGAGTGCATATATCAAAGgtaattaagataattttaact-gtacattctcctgtctccttgtgtgaaattccatgcagatcactttctacgtctgcatttgtaatatttgagtctagaa

upper sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G052235_T02 (Zea mays), 5'ss of exon 4
TGGAGCTCCTGAACCTGATTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTGCACATATCAAAGgtagaccatacgagtccactttgttgatccttgtttatgttatagttatttgtttagttttgaatataatttgtaaggatgcttgacaatgagcatggcg--
||| ||| | |||||||||||||||||| |||| ||||| |  ||| | ||||| ||||||||||| |||||  | || ||||| ||||| ||||||||||||  | | |  |        |||| || ||| |  ||   |   || |||   | | |    ||  ||| | ||    ||| |     |   | | |    
TGGTGCTTCAGAACCTGATTGGGCATCATTAAACCTTGGCGCACTTCTATGCATAGAGTGTTCTGGGGTACACAGAAATCTTGGAGTGCATATATCAAAGgtat-ctacaaaacctttaactgttaattcttttaaatag-actcttgtttcccttgatggtcatgcaatatttatttctgcattcatttattctttgaagt

upper sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM5G872204_T02 (Zea mays), 5'ss of exon 15
TGGAGCTCCTGAACCTGATTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTGCACATATCAAAGgtagaccatacgagtccactttgttgatccttgtttatg--ttatagttatttgtt-tagttttgaatataatttgtaaggatgcttgacaatgagcatggcg
||| |||   |||||||||||||||||| |||| ||||| |  ||| | ||||| ||||||||||| || || || || ||||| ||||| |||||||||||| ||||    | |      |||| || ||| || ||   |  |||||  |  |  | ||  || | |||  ||| |    ||| |     |   | | |  
TGGTGCTTTGGAACCTGATTGGGCATCATTAAACCTTGGCGCACTTCTATGCATAGAGTGTTCTGGGGTGCACCGAAATCTTGGAGTGCATATATCAAAGgta-accacgaaaattttaactgttaattctttttaatagatgctagtttctcttgatggtcatgcacatagattg-atttctgcattcatttattctttga-

upper sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G117329_T01 (Zea mays), 5'ss of exon 1
TGGAGCTCCTGAACCTGATTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTGCACATATCAAAGgtagaccatacgagtccactttgttgatccttgtttatg---ttatagttatttgtttagttttg-aatat-aatttgtaaggatgcttgacaatgagcatggcg
||| ||| | |||||||||||||||||| |||| ||||| |  ||| | ||||| ||||||||||| || ||  | || ||||| ||||| ||||||||||||  | | |  |       ||||| || ||| |  |||   |  |  || | |   | ||  || |||||  |||| |        ||     | |   |    
TGGTGCTTCAGAACCTGATTGGGCATCATTAAACCTTGGCGCACTTCTATGCATAGAGTGTTCTGGGGTGCACAGAAATCTTGGAGTGCATATATCAAAGgtat-ctacaaaacctttaattgtt-attcttttaaatggactcttgtttctcttgatggtcatgcaatattgatttctgcattcatttattctttaaagtc---

upper sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G059994_T01 (Zea mays), 5'ss of exon 9
TGGAGCTCCTGAACCTGATTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTGCACATATCAAAGgtagaccatacgagtccactttgttgatccttgtttatgttatagttatttgtttagttttgaatataatttgtaaggatgcttgacaatgagcatggcg--
||| ||| | |||||||||||||||||| |||| ||||| |  ||| | ||||| ||||||||||| || ||  | || ||||| ||||| ||||||||||||  | | |  |        |||| || ||| |  ||   |   || |||   | | |    ||  ||| | ||    ||| |     |   | | |    
TGGTGCTTCAGAACCTGATTGGGCATCATTAAACCTTGGCGCACTTCTATGCATAGAGTGTTCTGGGGTGCACAGAAATCTTGGAGTGCATATATCAAAGgtat-ctacaaaacctttaactgttaattcttttaaatag-actcttgtttcccttgatggtcatgcaatatttatttctgcattcatttattctttgaagt

upper sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G090752_T01 (Zea mays), 5'ss of exon 3
TGGAGCTCCTGAACCTGATTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTGCACATATCAAAGgtagaccatacgagtccactttgttgatccttgtttatgttatagttatttgtttagttttgaatataatttgtaaggatgcttgacaatgagcatggcg--
||| ||| | |||||||||||||||||| |||| ||||| |  ||| | ||||| ||||||||||| || ||  | || ||||| ||||| ||||||| ||||  | | |  |        |||| |  ||| |  ||   |   || ||| | | | |    ||  ||| | ||    ||| |     |   | | |    
TGGTGCTTCAGAACCTGATTGGGCATCATTAAACCTTGGCGCACTTCTATGCATAGAGTGTTCTGGGGTGCACAGAAATCTTGGAGTGCATATATCAATGgtat-ctacaaaacctttaactgttaactcttttaaatag-actcttgtttctcttgatggtcatgcaatatttatttctgcattcatttattctttgaagt

upper sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 15
lower sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 15
TGGAGCTCCTGAACCTGATTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTGCACATATCAAAGgtagaccatacgagtccactttgttgatccttgtttatgttatagttatttgtttagttttgaatataatttgtaaggatgcttgaca----atgagcatggcg--
||||||||| ||||| || ||||| ||  ||||||| || |||||||| || || || ||||||||||| || ||||| ||||||||||| ||||| |||||| |       | ||  |     |  |  ||| |||    |||  | |  | |   |    |  |   | || ||||| |      |    ||||| ||   |  
TGGAGCTCCAGAACCAGACTGGGCTTCTTTAAATCTGGGGGTTCTTGTCTGTATCGAATGTTCTGGTGTTCACCGTAATCTTGGTGTGCATATATCTAAGgtaaa------aaatctccagaactcttaattgcttagaaaatatatgtaggctctataacaaccaacttatggaaggacgtaaagaagtccatgagaattttgaa

upper sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 15
lower sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 15
TGGAGCTCCTGAACCTGATTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTACATCGTAACCTTGGTGTGCACATATCAAAGgtagaccatacgagtccactttgttgatccttgtttatgttatagttatttgtttagttttgaatataat--ttgtaaggatgcttgacaatgagcatggcg
||| || |||||||| || ||||||||  ||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| || ||||||||||||     |   ||| ||  |  |  ||  ||     |    |  ||   || ||  || ||    | ||  | | |     | ||     ||  |||    
TGGGGCACCTGAACCAGACTGGGCATCCTTAAATCTTGGTGTTCTTGTCTGCATTGAATGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAGgtaagttgtcaaagttcaactgctacatggtttccctttgcttcattggctgctttcttctgtgagtcatgctggcatcacagtttcttcttgttcatca--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11413171|gb|BF425182.1|BF425182
EST:     GTAACCTTGGTGTGCACATATCAAAG                         GTCAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTCATAAGT
genomic: GTAACCTTGGTGTGCACATATCAAAGgtagaccata ... attgttacagGTCAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTCATAAGT