1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CACTTTCTCCTTCTCATTTGAGTTCACATGCAGGGCTTAGGTCACCATTGGGTACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTATAGgttcgtaaaatttgctgtcttcacatattaaggctgagactcatgcaatgtattttaccctatgtgaaaccattgtttttcttgattttataagagagcc...
species | Glycine max |
transcript | GLYMA08G21620.2 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GGTACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTATAG GTGCTACTTGGGTGTGGAGCTACTTAAATCTAATAACGAGGGGAATGAATCEST: gi|58015289|gb|CX702031.1|CX702031
genomic: GGTACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTATAGgttcgtaaaa ... agttttgtagGTGCTACTTGGGTGTGGAGCTACTTAAATCTAATAACGAGGGGAATGAATC
EST: TCCTGAAGCACAACCCCTTGCTCATTGGATCTGCAACAGTTATAG GTGCTACTTGGGTGTGGAGCTACTTAAATCTAATAACGAGGGGAATGAATCEST: gi|208326243|gb|GE120667.1|GE120667
genomic: TCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTATAGgttcgtaaaa ... agttttgtagGTGCTACTTGGGTGTGGAGCTACTTAAATCTAATAACGAGGGGAATGAATC
EST: CAAACCCTTGCNCATTGGATCTGCAACAGTTATAG GTGCTACTTGGGTGTGGAGCTACTTAAATCTAACAACGAGGGGAATGAATC
genomic: CAAACCCTTGCTCATTGGATCTGCAACAGTTATAGgttcgtaaaa ... agttttgtagGTGCTACTTGGGTGTGGAGCTACTTAAATCTAATAACGAGGGGAATGAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTTTCTCCTTCTCATTTGAGTTCACATGCAGGGCTTAGGTCACCATTGGGTACTCCTGAAGCACAAACCCTTGCTCATTGGATCTGCAACAGTTATAGgttcgtaaaatttgctgtcttcacatattaaggctgagactcatgcaatgtattttaccctatgtgaaaccattgtttttcttgattttataagagagcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC