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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCGTTTGCTGATGATGCCCCCCTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGgtttgcgtcatactcatacgttgttgaaccagcttattttattttttccgacaagaatcttttaattattactatgcaattttcacag

Basic information

species Glycine max
transcript GLYMA08G21610.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21610.1 (Glycine max), 5'ss of exon 15
lower sequence: AT1G52150.1 (Arabidopsis thaliana), 5'ss of exon 14
CTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCGTTTGCTGATGATGCCCCCCTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGgtttgcgtcatactcatacgttgttgaaccagcttattttattttttccgacaagaatcttttaattattactatgcaattttcacag
|||||| |||||||||| ||||||||| |||||||||||||| |||||||| || || || |||||||| ||||| || || |||||||| || | ||||||     | | | | ||  ||| |    |||  |  || |||| ||          ||  || |  | ||  |   | |      |||
CTGTGCGGAACTTATATTTGCTCCAATCGATGCTTCGTTTGCGGATGATGCACCTCTGCTTCCTTCTGGTTTTCGTATTATCCCTCTTGATTCCGCAAAGgt--aaataaaagttat--gttttctgtccaagtc-ttctattattc-------agattcttaagcttttcttgaaccaaaaaagcag

upper sequence: GLYMA08G21610.1 (Glycine max), 5'ss of exon 15
lower sequence: AT1G52150.2 (Arabidopsis thaliana), 5'ss of exon 14
CTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCGTTTGCTGATGATGCCCCCCTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGgtttgcgtcatactcatacgttgttgaaccagcttattttattttttccgacaagaatcttttaattattactatgcaattttcacag
|||||| |||||||||| ||||||||| |||||||||||||| |||||||| || || || |||||||| ||||| || || |||||||| || | ||||||     | | | | ||  ||| |    |||  |  || |||| ||         || |||||  | |  || |   ||         
CTGTGCGGAACTTATATTTGCTCCAATCGATGCTTCGTTTGCGGATGATGCACCTCTGCTTCCTTCTGGTTTTCGTATTATCCCTCTTGATTCCGCAAAGgt--aaataaaagttat--gttttctgtccaagtc-ttctattattcagattcttaagcttttcttga--accaaaaaag--------

upper sequence: GLYMA08G21610.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 14
CTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCGTTTGCTGATGATGCCCCCCTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGgtttgcgtcatactcatac--gttgttgaacc-----agcttattttattttttccgacaagaatcttttaattatt--actatgcaattttcacag
|||||||||||| |||| |||||| ||||| ||||| |||||||||||||| || ||| | |||||||| ||||||||||| |||||||| ||||| |||||| || |   | ||| |     ||||| |       || || | ||   |||| |    |   |  |||||| | |  | | | ||||  |  |||
CTGTGCTGAACTCATATTTGCTCCCATTGACGCTTCTTTTGCTGATGATGCACCTCTTTTGCCTTCTGGTTTTCGCATCATCCCTCTTGATTCTGGGAAGgttagcatttaaatcacattaactgttgtattcctttagtttctcttgcctttttctttgacttttctttaatcaatgaattgtccaatgat-gcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9820216|gb|BE555726.1|BE555726
EST:     CCCCCCTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAG                         GAAGCTTC-AGCCCCA-TCGTACACTTGACCTTGCATCTTCCCCTGACGTT
genomic: CCCCCCTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGgtttgcgtca ... attttcacagGAAGCTTCCAGCCCCAATCGTACACTTGACCTTGCATCTTCCCTTGACGTT