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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGGAAAATGGAAAATAGAGCCTGGACTTGCAGCAATTTTAATCATGGAGCATGTCCTCTTGTTGACTAAGTTCGGTTTCTCTCGCTTCATTCCTGAGgtgattgttttgcttcccatccactatcattcttccatttcaaagatgctttatgagagattatgacaggctatggtactgttttctttgaag

Basic information

species Glycine max
transcript GLYMA08G20980.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20980.2 (Glycine max), 5'ss of exon 15
lower sequence: Vv09s0002g02590.t01 (Vitis vinifera), 5'ss of exon 15
GGAGGGAAAATGGAAAATAGAGCCTGGACTTGCAGCAATTTTAATCATGGAGCATGTCCTCTTGTTGACTAAGTTCGGTTTCTCTCGCTTCATTCCTGAGgtga--ttgttttgcttcccatccactatcattcttccatttcaa-agatgctttatgagagattat----gacaggctatggtactgttttctttgaag-------------------------------
|||||| ||||||||||||||||| ||||||||||||||  | |||||||||||||| |||||| ||| ||| || || |||||||||||  |||||||||| |  || ||    ||  ||||||   ||  |||   ||| | | | ||| ||  ||||| | | |     | |     | | | ||||   |   ||                                
GGAGGGGAAATGGAAAATAGAGCCAGGACTTGCAGCAATCCTCATCATGGAGCATGTTCTCTTGCTGATTAAATTTGGGTTCTCTCGCTTTGTTCCTGAGgtaagcttcttcacttttgcatccatgttc--tctcgaattactacacatgtttcctgagaaaatgtttccaagaaaaacttgaattgttccatcataaattacagaacatggaaatctattttctgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58022020|gb|CX708761.1|CX708761
EST:     AGCATGTCCTCTTGTTGACTAAGTTCGGTTTCTCTCGCTTCATTCCTGAG                         GAACCTGCTTGGGTAAGAGCCAACCGTGCAAAACACACTACACAGGCACAG
genomic: AGCATGTCCTCTTGTTGACTAAGTTCGGTTTCTCTCGCTTCATTCCTGAGgtgattgttt ... ttctttgaagGAACCTGCTTGGGTAAGAGCCAACCGTGCAAAACACACTACACAGGCACAG