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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCACTTCTTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGTCGTAGAgttttaaggctcattgccgtaccatcttattattttttgatatcttattgatctattttgattgttaactgtttgtctttcagtggtgaatttgttgtggtgaacaag

Basic information

species Glycine max
transcript GLYMA08G15360.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15360.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 5'ss of exon 13
CTCACTTCTTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGTCGTAGAgttttaaggctcattgccgtaccat-cttattattttttgatatcttattgatctattttgattgttaactgtttgtctttcagtggtgaatttgttgtggtgaacaag
        ||||||| || ||||| ||||| || ||||| |||||||||||||| ||||| || ||||| || ||||| ||||| || ||||| ||  | ||| ||||| |  |  |   ||  | |||| |  |  |    |    |      |||  |   | ||   |  || | || |||                         
--------TTGTTGCTCCAATGCCTACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAATGCTTTGAACCTTATACATCTAACATATACAGCCGGCGGGTTCTAAGgtttgtaactacactgttcttagtgctcgtgctcactacaggtgcttatgattgattttgtttaattcttttccag-------------------------

upper sequence: GLYMA08G15360.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G304362_T01 (Zea mays), 5'ss of exon 13
CTCACTTCTTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGTCGTAGAgttttaaggctcattgccgtaccatcttattattttttgatatct-tattgatctattt-tgattgttaactgtttgtctttcagtggtgaatttgttgtggtgaacaag
        ||||||| || ||||| ||||| || ||||| |||||||||||||| |||||||||||||| || || || |||||||| ||||||||  | ||| |||||    |  |  |||   | || |  |||  | | | |  ||||   | |   ||           ||  ||||||  |  |    |||||   |        
--------TTGTTGCTCCAATGCCCACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaacaatact-ccctacttctttagggtgtttacattgtgatgtacatgtgcacatgtgattaatctttctatttt----ttgttccag--------

upper sequence: GLYMA08G15360.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G340527_T01 (Zea mays), 5'ss of exon 13
CTCACTTCTTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGTCGTAGAgttttaaggctcattgccgtaccatcttattattttttgatatct---tattgatctattttgattgttaactgtttgtctttcagtggtgaatttgttgtggtgaacaag
        ||||||| || ||||| ||||| || ||||| |||||||||||||| |||||||| ||||| || || || |||||||| ||||||||  | ||| |||||    |  |  |||  | ||| |  |||    | | |   | ||||  ||  | |    |  |   ||  ||||||  |  | | |                 
--------TTGTTGCTCCAATGCCCACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAGTGCTTTGAACCCTACACATCTAATATTTACAGTCGACGGGTTCTAAGgtctgtaacaatactct-ttacttctttagagtgtttacattttgacttacat-gtgcatatatgattgatctttctatttttattccag-------------

upper sequence: GLYMA08G15360.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 13
CTCACTTCTTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGTCGTAGAgttttaaggctcattgccgtacc---atcttattattttttgatatcttattgatctattttgattgttaactgtttgtctttcagtggtgaatttgttgtggtgaacaag
        |||| || |||||||| ||||| ||||| |||||||||||||| || |||||||| |||||||| |||||||| |||||||||||| | |||||| ||||| |  ||    ||||   | ||  | ||||| | | || |  |  |  | | |||     |||  || |    ||   | ||   |||||             
--------TTGTAGCACCTATGCCCACTGCTTCAACCAGCCAGATTCTTGGAAACAATGAGTGCTTTGAGCCCTATACTTCCAATATCTACAGTAGGAGAGTTCTAAGgtttgttttgctaccctaacctgttcattttctaagatttagt--acttttgttgccatctaa--gtctcctctttccttgtttctttgtcag----------

upper sequence: GLYMA08G15360.1 (Glycine max), 5'ss of exon 15
lower sequence: EFJ14283 (Selaginella moellendorffii), 5'ss of exon 12
CTCACTTCTTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGTCGTAGAgttttaaggctcattgccgtaccatcttattattttttgatatcttattgatctattttgattgttaactgtttgtctttcagtggtgaatttgttgtggtgaacaag
        ||||||| || ||||| || |||||||| ||||| |||||||| || || |||||||||||||| ||||| || ||||| |||| |||  | ||| |||||        | | |  | | |      | |||||  |   |   ||                                                      
--------TTGTTGCTCCAATGCCGACAGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACACTCGACGCGTTCTAAGgtatgccttctttctgtatcagc----tgtgatacttatgttgcctgccacag-----------------------------------------------

upper sequence: GLYMA08G15360.1 (Glycine max), 5'ss of exon 15
lower sequence: EFJ20162 (Selaginella moellendorffii), 5'ss of exon 1
CTCACTTCTTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGTCGTAGAgttttaaggctcattgccgtaccatcttattattttttgatatcttattgatctattttgattgttaactgtttgtctttcagtggtgaatttgttgtggtgaacaag
        ||||||| || ||||| || |||||||| ||||| |||||||| || || |||||||||||||| ||||| || ||||| |||  |||  | ||| |||||        | | |  | | |      | |||||  |   |   ||  |                                                   
--------TTGTTGCTCCAATGCCGACGGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACGCTCGACGCGTTCTAAGgtatgccttctttctgtatcagc----tgtgatacttatgttgcctgctacag-----------------------------------------------

upper sequence: GLYMA08G15360.1 (Glycine max), 5'ss of exon 15
lower sequence: EFJ20157 (Selaginella moellendorffii), 5'ss of exon 12
CTCACTTCTTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGTCGTAGAgttttaaggctcattgccgtaccatcttattattttttgatatcttattgatctattttgattgttaactgtttgtctttcagtggtgaatttgttgtggtgaacaag
        ||||||| || ||||| || |||||||| ||||| |||||||| || || |||||||||||||| ||||| || ||||| |||| |||  | ||| |||||        | | |  | | |      | |||||  |   |   ||  |                                                   
--------TTGTTGCTCCAATGCCGACAGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACACTCGACGCGTTCTAAGgtatgccttctttctgtatcagc----tgtgatacttatgttgcctgctacag-----------------------------------------------