Sequence
atgc intronic sequence ATGC exonic sequenceGTTCATGCATGAAAGACTTTGTACTCATGCTGAATCTGTTGCTTTCTTTGGGGGTGGTGCTCGAGAAAAAGCTgtgagcatcctaacttagcaatgtttaatgtattttctttaagtgtgtgcttgtttgaggacatgaaaaggttgaaatgaaacctgatgcttgtcacaaa...
Basic information
species | Glycine max |
transcript | GLYMA08G14480.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G14480.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G060045_T01 (Zea mays), 5'ss of exon 17
GTTCATGCATGAAAGACTTTGTACTCATGCTGAATCTGTTGCTTTCTTTGGGGGTGGTGCTCGAGAAAAAGCTgtgagcatcctaactta-gcaatgtttaatgtattttctttaagtgtgtgcttgtttgaggacatgaaaag-gttgaaatgaaacc--tgatgcttgtcacaaa
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GTTCATGCACTCGAGACTGCGGACACATGCTGAATCAATTGCTTTCTTTGGTGGTGGTTCAAGAGAAAAAGCGgtgagtgccatcattaatacaactcccaac---cctattctagggttagggtttcccacataaatggatagtgcccaagttcatacaatgagaattgtttagg-
upper sequence: GLYMA08G14480.1 (Glycine max), 5'ss of exon 15
lower sequence: AT4G39850.1 (Arabidopsis thaliana), 5'ss of exon 18
GTTCATGCATGAAAGACTTTGTACTCATGCTGAATCTGTTGCTTTCTTTGGGGGTGGTGCTCGAGAAAAAGCTgtgagcatcctaact----tagcaatgtttaatgtattttctttaagtgtgtgcttgtttgaggacatgaaaaggttgaaatgaaacctgatgcttgtcacaaa-
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GTTTATGCACGAGAGGCTGAACACTCATGCTGAATCTATTGCATTCTTTGGAGGTGGAGCTCGAGAAAAGGCTgtaagtttcttaattgccctagctatagctgctggattttgggtagttat-ttttgaatcaaagctaccggaag--tgaacttggaattgtt--ttatcatttat
upper sequence: GLYMA08G14480.1 (Glycine max), 5'ss of exon 15
lower sequence: AT4G39850.3 (Arabidopsis thaliana), 5'ss of exon 18
GTTCATGCATGAAAGACTTTGTACTCATGCTGAATCTGTTGCTTTCTTTGGGGGTGGTGCTCGAGAAAAAGCTgtgagcatcctaact----tagcaatgtttaatgtattttctttaagtgtgtgcttgtttgaggacatgaaaagg----ttgaaatgaaacctgatgcttgtcacaaa---------------------------------------------------------------------------------------------
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------------------GAACACTCATGCTGAATCTATTGCATTCTTTGGAGGTGGAGCTCGAGAAAAGGCTGTAAGTTTCTTAATTGCCCTAGCTATAGCTGCTGGATTTTGGGTAgttatttttgaatcaaagctaccggaagtgaacttggaattgttttatcatttatgtgatgatggtcttttcatgtcaaatgtggcttcacttgtgtgagctttaacatgtctcataggtgaatctgctcttattttatttctctccatggagcag
upper sequence: GLYMA08G14480.1 (Glycine max), 5'ss of exon 15
lower sequence: AT4G39850.2 (Arabidopsis thaliana), 5'ss of exon 18
GTTCATGCATGAAAGACTTTGTACTCATGCTGAATCTGTTGCTTTCTTTGGGGGTGGTGCTCGAGAAAAAGCTgtgagcatcctaact----tagcaatgtttaatgtattttctttaagtgtgtgcttgtttgaggacatgaaaagg----ttgaaatgaaacctgatgcttgtcacaaa------------------------------------------------------------------------------------------
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GTTTATGCACGAGAGGCTGAACACTCATGCTGAATCTATTGCATTCTTTGGAGGTGGAGCTCGAGAAAAGGCTgtaagtttcttaattgccctagctatagctgctggattttgggtagttatttttgaatcaaagctaccggaagtgaacttggaattgttttatcatttatgtgatgatggtcttttcatgtcaaatgtggcttcacttgtgtgagctttaacatgtctcataggtgaatctgctcttattttatttctctccatggag
upper sequence: GLYMA08G14480.1 (Glycine max), 5'ss of exon 15
lower sequence: PP1S150_142V6.1 (Physcomitrella patens), 5'ss of exon 19
GTTCATGCATGAAAGACTTTGTACTCATGCTGAATCTGTTGCTTTCTTTGGGGGTGGTGCTCGAGAAAAAGCTgtgagcatcctaacttagcaatgtttaatgtattttctttaagtgtgtgcttgtttgaggacatgaaaaggttgaaatgaaacctgatgcttgtcacaaa-----
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ATATATACACTCCAGGCTAAGAACTCATGCAGAGTCTATAGCTTTCTTTGGGGGTGGTTCTCGTGAACAAGCTgtaagttctgagaatcattgagact--gggtgtcctctactaataagttcaaatcttatcgtacgctcg---tgaaatgaaacctcatgactgcattacccttaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15288034|gb|BI471925.1|BI471925EST: CTCATGCTGAATCTGTTGCTTTCTTTGGGGGTGGTGCTCGAGAAAAAGCT ATGGTCGAGTCTAGATTCAGGGAGCTTCTCACCCACTCCGAGTACCTTTTA
genomic: CTCATGCTGAATCTGTTGCTTTCTTTGGGGGTGGTGCTCGAGAAAAAGCTgtgagcatcc ... tgttgagcagATGGTCGAGTCTAGATTCAGGGAGCTTCTCACCCACTCCGAGTACCTTTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCATGCATGAAAGACTTTGTACTCATGCTGAATCTGTTGCTTTCTTTGGGGGTGGTGCTCGAGAAAAAGCTgtgagcatcctaacttagcaatgtttaatgtattttctttaagtgtgtgcttgtttgaggacatgaaaaggttgaaatgaaacctgatgcttgtcacaaa
- - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaaa