1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TTTCTGTTAATGCTGCTAAGGATGCCACTGAGCTGGTCGCAAAATTACGGGCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgcttactagtaatagtaactgtcgtttcctttgtatgtcttcttcccagctttgggtctgtttgttgaatttatctttgttatgtcattatatt...
species | Glycine max |
transcript | GLYMA08G12970.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGGEST: gi|58021211|gb|CX707953.1|CX707953
genomic: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGG
EST: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGGEST: gi|298168848|gb|HO009778.1|HO009778
genomic: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGG
EST: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGGEST: gi|193682839|gb|FK623867.1|FK623867
genomic: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGG
EST: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGGEST: gi|192311649|gb|FK004868.1|FK004868
genomic: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGG
EST: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGGEST: gi|298165014|gb|HO011063.1|HO011063
genomic: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGG
EST: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGGEST: gi|17021742|gb|BM092776.1|BM092776
genomic: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGG
EST: ACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGGEST: gi|10255075|gb|BE822841.1|BE822841
genomic: ACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGG
EST: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGGEST: gi|120495038|gb|EH223205.1|EH223205
genomic: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGG
EST: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGGEST: gi|192324297|gb|FK018273.1|FK018273
genomic: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGG
EST: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGGEST: gi|58022777|gb|CX709518.1|CX709518
genomic: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGG
EST: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGGEST: gi|58017859|gb|CX704601.1|CX704601
genomic: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGG
EST: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGGEST: gi|15200044|gb|BI424143.1|BI424143
genomic: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGG
EST: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGGEST: gi|51335203|gb|CO979069.1|CO979069
genomic: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGG
EST: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGGEST: gi|58019703|gb|CX706445.1|CX706445
genomic: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGG
EST: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGGEST: gi|151398434|gb|EV268305.1|EV268305
genomic: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGG
EST: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGG
genomic: GCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCTGAAGGGAAAATCAGAAACAACTTGGAGGCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTGTTAATGCTGCTAAGGATGCCACTGAGCTGGTCGCAAAATTACGGGCCTACCACCATTCAGCACAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgcttactagtaatagtaactgtcgtttcctttgtatgtcttcttcccagctttgggtctgtttgttgaatttatctttgttatgtcattatatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcttccc