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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTAACATGCCAAACGGACAGCCCAAGTGGCTTCTTTCTCTTATCCCGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatcttctttccttctttcatttgtttatttttcttattaattaatattcaagtcttatgaaaggcatcatactaagttgcactttttacatgcactgctatcttgacatggtttgcag

Basic information

species Glycine max
transcript GLYMA08G08730.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G458538_T01 (Zea mays), 5'ss of exon 9
GTCTAACATGCCAAACGGACAGCCCAAGTGGCTTCTTTCTCTTATCCCGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatcttctttccttctttcatttgtttatttttcttattaattaatattcaagtcttatgaaaggcatcatactaagttgcactttttacatgcactgctatcttgacatggtttgcag
||||| ||||||||| ||||| || ||||||||||||| | | || || || ||||||||||| ||||||||||| || || || || ||  |  |||||||   |    |||   |     |  ||   |       |   | |   ||||||   | || ||| | ||   ||| | ||     | | | |    | |                     
GTCTAGCATGCCAAATGGACAACCAAAGTGGCTTCTTTGTTTCATACCAGATTATCCTATGCTTAACTTCATGCTTACTACAGCGATCTATCTTCTTgtaagttgccaacttcaaacccatctcagtacttggaaagaaaacagttccattcaacagtcataaaaaggat---actcatttcattatctaataaatgcag---------------------

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G46340.1 (Arabidopsis thaliana), 5'ss of exon 15
GTCTAACATGCCAAACGGACAGCCCAAGTGGCTTCTTTCTCTTATCCCGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatcttctttccttctttcatttgtttatttttcttattaattaatattcaagtcttatgaaaggcatcatactaagttgcactttttacatgcactgctatcttgacatggtttgcag
 || ||||||||  |||| || || || |||||||| ||| |||| ||||  || ||||||||||| |||||||| |||||||||||||||||| ||||||| | |  | |  ||||||   | |     | |||  |||||         ||||  || |||||    || || |   |     |    |                              
ATCAAACATGCCTGACGGGCAACCAAAATGGCTTCTCTCTATTATTCCGGGATACCCTATGCTCAATTTCATGCTGACAACTGCTATATACGTCCTTgtaagaaac--cgtaacttcttc--tctccccgtattttctattag--------caagctttctgaaacatctc-tatttgttcttgttcgccag-----------------------------

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv07s0005g05580.t01 (Vitis vinifera), 5'ss of exon 1
---GTCTAACATGCCAAACGGACAGCCCAAGTGGCTTCTTTCTCTTATCCCGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatcttctttccttctttcatttgtttatttttcttattaattaatattcaagtcttatgaaaggcatcatactaagttgcactttttacatgcactgctatcttgacatggtttgcag
    || |||| ||| || |||||||| |||||||||||||||||||| || || ||| |  |||||||||||||||| |||||||| || ||  |||| ||||| |  || ||     | || ||   |  | |||| | | | |  ||||       || |||||   |  | |  | | ||||   | ||     | ||||                    
CAGATCAAACAAGCCTAATGGACAGCCTAAGTGGCTTCTTTCTCTTATTCCAGATTATTCGCTGCTCAACTTCATGCTCACAACTGCCATCTATATCTTAgtaagcagattttt-----ccttgatgcttcaaattttataagtgaaaaata-------ctaatgaatctc-ccttttttatttgcttgtgttgtcctctctgcag------------------

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv00s0650g00030.t01 (Vitis vinifera), 5'ss of exon 1
---GTCTAACATGCCAAACGGACAGCCCAAGTGGCTTCTTTCTCTTATCCCGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatcttctttccttctttcatttgtttatttttcttattaattaatattcaagtcttatgaaaggcatcatactaagttgcactttttacatgcactgctatcttgacatggtttgcag
    || |||| ||| || |||||||| |||||||||||||||||||| || || ||| |  |||||||||||||||| |||||||| || ||  |||| ||||| |  || ||     | || ||   |  | |||| | | | |  ||||       || |||||   |  | |  | | ||||   | ||     | ||||                    
CAGATCAAACAAGCCTAATGGACAGCCTAAGTGGCTTCTTTCTCTTATTCCAGATTATTCGCTGCTCAACTTCATGCTCACAACTGCCATCTATATCTTAgtaagcagattttt-----ccttgatgcttcaaattttataagtgaaaaata-------ctaatgaatctc-ccctttttatttgcttgtgttgtcctctctgcag------------------

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 9
GTCTAACATGCCAAACGGACAGCCCAAGTGGCTTCTTTCTCTTATCCCGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatcttctttccttctttcatttgtttatttttcttattaattaatattcaagtcttatgaaaggcatcatactaagttgcactttttacatgcactgctatcttgacatggtttgcag
 || |||| ||| || |||||||| ||||||||||||||| |||| || || |||||  |||||||||||||||| || ||||| || ||  |||| ||||| |  || ||     | || ||   |  | ||||   | | |  ||||       || |||||   | || |  | | ||||   | ||     | ||||                    
ATCAAACAAGCCTAATGGACAGCCTAAGTGGCTTCTTTCTTTTATTCCAGATTATCCGTTGCTCAACTTCATGCTCACGACTGCCATCTATATCTTAgtaagcagattttt-----ccttgatgcttcaaattttacaagtgaaaaata-------ctaatgaatctc-tcttttttacttgcttgtgttgtcctctctgcag------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21601984|gb|BQ612315.1|BQ612315
EST:     CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTT                         GTATCTCATCGACTTTTTGAATTAACAAATACACTCAAGACAGTGTTCATA
genomic: CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatct ... tggtttgcagGTATCTCATCGACTTTTTGAATTAACAAATACACTCAAGACAGTGTTCATA
EST: gi|14516286|gb|BI094958.1|BI094958
EST:     CGGAGTATCCTATGTTCAACTTCATGCTAACAACTGCTATATACGTCTTT                         GTATCTCATCGACTTTTTGAATTAACAAATACACTCAAGACATTGTTCATA
genomic: CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatct ... tggtttgcagGTATCTCATCGACTTTTTGAATTAACAAATACACTCAAGACAGTGTTCATA
EST: gi|193538461|gb|FK498915.1|FK498915
EST:     GGAGTATCCTATGCTTCAACTTCATGCTAACAACTGCTATATACGTCTTT                         GTATCTCATCGAC-TTTTGAATTAACAAATACACTCAAGACAGTGTTCATA
genomic: GGAGTATCCTATGC-TCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatct ... tggtttgcagGTATCTCATCGACTTTTTGAATTAACAAATACACTCAAGACAGTGTTCATA