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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTGAGTTGTATGATTTTGATGATGAGAAGgtaagttgacgtattatctttgctaactatggactatgtttttattgctcaattttgcatcaacccccctgccctgcctcttgtgtttttaaccaacctctgtatgtgttttttttctttaaatgaag

Basic information

species Glycine max
transcript GLYMA07G38050.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 15
lower sequence: AC235535.1_FGT001 (Zea mays), 5'ss of exon 15
CTGCTGAGTTGTATGATTTTGATGATGAGAAGgtaa--gttgacgtattatctttgctaactatggactatgt---ttttattgctcaattttgcatcaacccccctgccctgcctcttgtgtttttaaccaacctctgtatgtgttttttttctttaaatgaag
 ||| ||  |||||||||||||||||||||||||||   || |   |||   ||      || |  | | ||    |||| |||     | |||| ||||| ||  |    |  ||| |   |  ||     |                                
ATGCCGAACTGTATGATTTTGATGATGAGAAGgtaatgattcaaacattcaattcatgtgctgtaaattgtgagtgtttttttgacgtgtcttgc-tcaacaccaattaaat-tctcctccatgattgcttgaag------------------------------

upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 15
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 15
CTGCTGAGTTGTATGATTTTGATGATGAGAAGgtaagttgacgtattatct-ttgctaactatggactat-gtttttattgctcaattttg-catcaacccccctgccctgcctcttgtgtttttaaccaacctctgtatgtgttttttttctttaaatgaag
|||||||||||||||||||||||||||| ||||||     |  | |  ||| ||||||  || |    ||  || || |  ||  ||  ||   | |  | |  ||      ||  |  || ||  |  | |   | | ||  || | ||  | ||       
CTGCTGAGTTGTATGATTTTGATGATGAAAAGgtagaagcatttttattctcttgctagataggcttaattattgttttcccttgatactggttttaggcacattggataatctaataagtatt-gattatctattctttgctttctgttgatgtag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208048104|gb|GD848771.1|GD848771
EST:     CTGCTGAGTTGTATGATTTTGATGATGAGAAG                         GATGAGAACAAATTTGATTTCGAAAAAATTGTGAGTGAAAATTGGGTCGAG
genomic: CTGCTGAGTTGTATGATTTTGATGATGAGAAGgtaagttgac ... ttaaatgaagGATGAGAACAAATTTGATTTCAAAAAAATTGTGAGTGAAAATTGGGTCGAG