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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAGCTAAGATGTGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGAgtagggagtcttgttttcctctgctgctaccgctcttctcttttttgtcaaatttttctgtcatactctccatttttctcattgttgtctcactggcctcatggcag

Basic information

species Glycine max
transcript GLYMA07G35090.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G35090.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G56360.1 (Arabidopsis thaliana), 5'ss of exon 14
GTCAAGCTAAGATGTGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGAgtagggagtcttgttttcctctgctgct-----accgctcttctcttttttgtcaaatttttctgtc-atactctccatttttctcattgttgtctcactggcctcatggcag
|| || |||||||||||||||||||| ||| |||  ||||| ||||||||||||||||||||||| |   |||| |  |   || |  ||       |    |   ||||| | || | ||||||| |  |||  ||  | ||||  |  | ||||  ||               
GTGAAACTAAGATGTGGGTTGAAAAATGAGCTTATGGATGTCGATGAACCAAGCCGTTGCGAgtaagt--tcttatcgtaacctacatctcacgggtcatcatctccttttatctccagtttttctttttatatccttaaatttttactctcttgttgcag--------------

upper sequence: GLYMA07G35090.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv06s0004g00140.t01 (Vitis vinifera), 5'ss of exon 14
GTCAAGCTAAGATGTGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGAgtagggagtcttgttttcctctgctgctaccgctcttctcttttttgtcaaatttttctgtcatactctccatttttctcattgttgtctcactggcctcatggcag
|||||||||||||||||||||||||| ||| |||||||||| |||||||||||| | |||||||| ||            ||||  |  |    ||   |||||    |||||      | |  | |   |   | | ||| | |  | | | |      |||||||||
GTCAAGCTAAGATGTGGGTTGAAAAATGAGGTTACTGATGTTGATGAACCAAGCAGATGCGAgtaagg------------ctctatttttgtaactaacctctt----gtcaagg----cagatacatagtgtttctctctgacttgtatttta------tcatggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192297387|gb|FG990679.1|FG990679
EST:     TGTGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGA                         ATATGTAGCAGTATTATCTACCCCAGCCCTTTGTCAAGAGGAAAGGCTGAA
genomic: TGTGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGAgtagggagtc ... ctcatggcagATATGTAGCAGTATTATCTACCCCAGCCCTTTGTCAAGAGGAAAGGCTGAA
EST: gi|254332164|gb|GR845994.1|GR845994
EST:     TGTGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGA                         ATATGTAGCAGTATTATCTACCCCAGCCCTTTGTCAAGAGGAAAGGCTGAA
genomic: TGTGGGTTGAAAAACGAGATTACTGATGTAGATGAACCAAGCCGTTGCGAgtagggagtc ... ctcatggcagATATGTAGCAGTATTATCTACCCCAGCCCTTTGTCAAGAGGAAAGGCTGAA