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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAAATAGATGGCAAGGTCTTTGGTAAAGGTATTGGATTAACATGGGATGAGGCTAAAATGCAGgtctgttgttttctttaattatgaaatattatttatgaatatatatgtcttgttccattaatttgattaacttcttcacatatggtgttggagcactaaatatgcattctttctttag

Basic information

species Glycine max
transcript GLYMA07G31430.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G31430.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv00s0370g00030.t01 (Vitis vinifera), 5'ss of exon 3
GTTGAAATAGATGGCAAGGTCTTTGGTAAAGGTATTGGATTAACATGGGATGAGGCTAAAATGCAGgtctgttgttttctttaattatgaaatattattt-atgaa-tatatatgtcttgttccattaatttgattaacttcttcacatatggtgttggagcactaaa--tatgcattctttctttag----------
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GTTGAAATAGATGGACAGGTCTTAGGGAAGGGAACTGGATCAACATGGGATGATGCTAAAATGCAGgtattaactctttgttgttttcgcttttttcttttatggcctacttatgttttttctccttacataaattttatgccccttacttttttctg-agtactgaccctttggactttttttttttttgtacttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10236065|gb|BE805013.1|BE805013
EST:     GGATTAACATGGGATGAGGCTAAAATGCAG                         GCTGCCGAGAAGGCACTTGGAAGTCTAAGATCAAAGCTTGGCCAAAGCATT
genomic: GGATTAACATGGGATGAGGCTAAAATGCAGgtctgttgtt ... ctttctttagGCTGCCGAGAAGGCACTTGGAAGTCTAAGATCAAAGCTTGGCCAAAGCATT