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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCTACACTTGCAACCCATGTTAAAGCAGTGTTTACTTGCCTGCTAGACCAAgtaagttaatgtcacattttacagcattcatatacttgataccttcagtgcattggagttcattcttctggggtcattctctgtctcttttgcag

Basic information

species Glycine max
transcript GLYMA07G05160.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05160.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G12370.1 (Arabidopsis thaliana), 5'ss of exon 16
CCTGCTACACTTGCAACCCATGTTAAAGCAGTGTTTACTTGCCTGCTAGACCAAgtaagttaat-gtcacattttacag-cattcatatacttgataccttcagtgcattggagttcattcttctggggtcattctctgtctcttttgcag
|| || ||||||||| || ||||||||||  | |||||||||||||||||||| ||| | |  |  | | ||| || || |||||||||   | |||       |||| ||   |   |||||   |                        
CCAGCCACACTTGCAGCCAATGTTAAAGCTATATTTACTTGCCTGCTAGACCAGgtatgctgttcatgagattctagagtcattcatat---taatagagctgatgcaatg--atgagttcttgcag------------------------

upper sequence: GLYMA07G05160.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv15s0046g02200.t01 (Vitis vinifera), 5'ss of exon 15
CCTGCTACACTTGCAACCCATGTTAAAGCAGTGTTTACTTGCCTGCTAGACCAAgtaagttaatgtcacattttacagcattcatatacttgat-accttcagtgcattggagttcattcttctggggtc-attctctgtctcttttgcag
||| |||| ||||||||| |||| ||||| |||||||||||||||||||||||||||||||  |       | | |  ||||    |  |   |    ||  | |||||   ||    | |  |||  || |   | | | | |||| |||
CCTACTACCCTTGCAACCAATGTAAAAGCTGTGTTTACTTGCCTGCTAGACCAAgtaagttggttgatttctcttccacattgtggttttcagttgaatttggggcattcatgtgatctgtcatggattctaagatatttttatttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208094058|gb|GD894483.1|GD894483
EST:     CTACACTTGCAACCCATGTTAAAGCAGTGTTTACTTGCCTGCTAGACCAA                         GTTAGTCAATATATAGCAGATGGGCTTGAACGGGCGAGAGACAGCCTGACT
genomic: CTACACTTGCAACCCATGTTAAAGCAGTGTTTACTTGCCTGCTAGACCAAgtaagttaat ... tcttttgcagGTTAGTCAATATATAGCAGATGGGCTTGAACGGGCGAGAGACAGCCTGACT