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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTTTGTTCCAGTCATCAGGgtgagcaagggcatctttttaatatttcaaatacaattacggcctttattccaatcacaggtcctaactttgaccttgtattcataatatatgcag

Basic information

species Glycine max
transcript GLYMA07G03930.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03930.2 (Glycine max), 5'ss of exon 15
lower sequence: Vv09s0002g01800.t01 (Vitis vinifera), 5'ss of exon 16
GTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTTTGTTCCAGTCATCAGGgtgagcaagggc--atctttttaatatttcaaatacaattacggcctttattccaatcacaggtc-ctaactttgaccttgtattcataatatatgcag
|||  | ||||||||||| ||||||||||||||||| ||||| || |||||||| || ||||||| |||| |  |   |  |  || || ||| || ||| |   ||| |   ||  ||||||| | || |   | |     |  |  ||  ||| | || |||||
GTACCACAATGTGAATATCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAAGgtgggttatttctcagtttgtttataattgaaaca-gtttatgcttttagttccaataaaagtttatttaacacaaaatcatac-catgaaatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309363|gb|FK000571.1|FK000571
EST:     TTAATGTTGCTGTGCAGACTGATAACGGGCTCTTTGTTCCAGTCATCAGG                         GATGCAGACAAGAAAGGCCTCTCTACAATAGGGGAAGAGGTCAAACAATTG
genomic: TTAATGTTGCTGTGCAGACTGATAACGGGCTCTTTGTTCCAGTCATCAGGgtgagcaagg ... atatatgcagGATGCAGACAAGAAAGGCCTCTCTACAATAGGGGAAGAGGTCAAACAATTG
EST: gi|298165294|gb|HO011343.1|HO011343
EST:     TTAATGTTGCTGTGCAGACTGATAACGGGCTCTTTGTTCCAGTCATCAGG                         GATGCAGACAAGAAAGGCCTCTCTACAATAGGGGAAGAGGTCAAACAATTG
genomic: TTAATGTTGCTGTGCAGACTGATAACGGGCTCTTTGTTCCAGTCATCAGGgtgagcaagg ... atatatgcagGATGCAGACAAGAAAGGCCTCTCTACAATAGGGGAAGAGGTCAAACAATTG
EST: gi|298166277|gb|HO009248.1|HO009248
EST:     TTAATGTTGCTGTGCAGACTGATAACGGGCTCTTTGTTCCAGTCATCAGG                         GATGCAGACAAGAAAGGCCTCTCTACAATAGGGGAAGAGGTCAAACAATTG
genomic: TTAATGTTGCTGTGCAGACTGATAACGGGCTCTTTGTTCCAGTCATCAGGgtgagcaagg ... atatatgcagGATGCAGACAAGAAAGGCCTCTCTACAATAGGGGAAGAGGTCAAACAATTG
EST: gi|192309362|gb|FK000570.1|FK000570
EST:     TTAATGTTGCTGTGCAGACTGATAACGGGCTCTTTGTTCCAGTCATCAGG                         GATGCAGACAAGAAAGGCCTCTCTACAATAGGGGAAGAGGTCAAACAATTG
genomic: TTAATGTTGCTGTGCAGACTGATAACGGGCTCTTTGTTCCAGTCATCAGGgtgagcaagg ... atatatgcagGATGCAGACAAGAAAGGCCTCTCTACAATAGGGGAAGAGGTCAAACAATTG
EST: gi|8827585|gb|BE211315.1|BE211315
EST:     TTAATGTTGCTGTGCAGACTGATAACGGGCTCTTTGTTCCAGTCATCAGG                         GATGCAGACAAGAAAGGCCTCTCTACAATAGGGGAAGAGGTCAAACAATTG
genomic: TTAATGTTGCTGTGCAGACTGATAACGGGCTCTTTGTTCCAGTCATCAGGgtgagcaagg ... atatatgcagGATGCAGACAAGAAAGGCCTCTCTACAATAGGGGAAGAGGTCAAACAATTG