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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGCCGATGTTAAACGAAAACAAGATCAAGAATCAAAGCCTGTTCTAAGCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagcatggccattgtttgtgttatatttctgtgcgtgtgtataagatatatcaggtaagagtgtgaaagaaagtaagtttcatataatgacata...

Basic information

species Glycine max
transcript GLYMA07G02180.1
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9985008|gb|BE659116.1|BE659116
EST:     GAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG                         ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
genomic: GAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: gi|254347505|gb|GR853754.1|GR853754
EST:     GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG                         ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: gi|6952008|gb|AW424076.1|AW424076
EST:     GAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG                         ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
genomic: GAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: gi|22933398|gb|BU550537.1|BU550537
EST:     GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG                         ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: gi|254342855|gb|GR859017.1|GR859017
EST:     GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG                         ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: gi|254322526|gb|GR837940.1|GR837940
EST:     GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG                         ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: gi|254317383|gb|GR826328.1|GR826328
EST:     GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG                         ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: gi|254342856|gb|GR859018.1|GR859018
EST:     GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG                         ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: gi|254348419|gb|GR852098.1|GR852098
EST:     GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG                         ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: gi|254321455|gb|GR824772.1|GR824772
EST:     GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG                         ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: gi|254347506|gb|GR853755.1|GR853755
EST:     GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG                         ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: gi|254321454|gb|GR824771.1|GR824771
EST:     GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG                         ATTCCAACTCAGCTAATCGTGGTGGGATAAACTCCCTCGCA-TGCCATGGG
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTG-TGGGATAAACTCCCTCGCAATGCCATGGG
EST: gi|254348418|gb|GR852097.1|GR852097
EST:     GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG                         ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG